Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00890 ATGTTTTCCAGCTCCCAATTCGATGCCACCACCGCCTTCTCCGGCGGCGGATTCATGTCCTCTCAGCCATCTAATTTCAACGATTCCTCTCCCGCACCGTCAAAAAGTCGCGAAACTCAGGGTTTGGTGCCGGTGACGGTTAAGCAGATCAGTGAAGCCTCTCAAACCGGTGACGAAAAGTCGAATTTCGTGATCAACGGTGTAGATCTGAACAATGTAACACTAGTCGGGATGGTGTTTGAGAAAGTTGAGAGAAACACCGATGTCAATTTTGTTTTGGACGATGGAACTGGACGAATAAAATGCCGAAGATGGGTTAATGAGACTTTTGACACAAAGGAAATGGAGGAAGTAATGAATGGTATGTACGTCCGTGTTTTTGGGCATTTGAAAAGCTTCCAAGGCGTTAGGCAACTTGTTGCTTTCTCTGTCAGGCCCGTGACAAATTTTGATGAGATCCCTTTTCACTTTATTGATTGCATACATAACCATCTTCGCTCCAAAACGAAGTTTGAAGGAATCACTTCTACAAATCCTTCATCGGTCTCATTGAACACTCCTGTCAAAAATGCCCCAAATGGATCTCAGGCGCCATCATCAACTCCAGCATATGCACAGTATAGCGTGGATGGACTTAAGGATTGCGATAAATTGATTATTGACTACCTGCAGCAGCATTCAGATATGTCAGATGAACGGGGAATACATGTCAATGAATTATCCCGGGAGCTCAAGCTTCCAATGGACAGGATCATGTTGTCGCTGAAGACTCTTGGAGACGATGGTTTAGTATACTCCACCATTGATGATTACCATTACAAACAAGCTTGA 831 0.4428 MFSSSQFDATTAFSGGGFMSSQPSNFNDSSPAPSKSRETQGLVPVTVKQISEASQTGDEKSNFVINGVDLNNVTLVGMVFEKVERNTDVNFVLDDGTGRIKCRRWVNETFDTKEMEEVMNGMYVRVFGHLKSFQGVRQLVAFSVRPVTNFDEIPFHFIDCIHNHLRSKTKFEGITSTNPSSVSLNTPVKNAPNGSQAPSSTPAYAQYSVDGLKDCDKLIIDYLQQHSDMSDERGIHVNELSRELKLPMDRIMLSLKTLGDDGLVYSTIDDYHYKQA 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00890 276 Pfam Replication protein A C terminal 188 270 IPR014892 -
Viun8g00890 276 CDD RPA2_DBD_D 72 165 - -
Viun8g00890 276 PANTHER REPLICATION PROTEIN A-RELATED 6 274 IPR040260 -
Viun8g00890 276 Gene3D - 38 169 IPR012340 -
Viun8g00890 276 FunFam Replication protein A 32 kDa subunit 207 276 - -
Viun8g00890 276 FunFam replication protein A 32 kDa subunit A-like 35 169 - -
Viun8g00890 276 SUPERFAMILY Nucleic acid-binding proteins 42 166 IPR012340 -
Viun8g00890 276 Gene3D - 206 276 IPR036388 -
Viun8g00890 276 PIRSF RPA32 1 276 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Viun8g00890 276 MobiDBLite consensus disorder prediction 176 202 - -
Viun8g00890 276 Pfam OB-fold nucleic acid binding domain 73 145 IPR004365 GO:0003676
Viun8g00890 276 SUPERFAMILY "Winged helix" DNA-binding domain 210 274 IPR036390 -
Viun8g00890 276 MobiDBLite consensus disorder prediction 13 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00890 Viun-Chr8 8748692 8752619 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00890 1 274 Core DNA Replication Machinery Family AT2G24490 49.458 6.03e-94 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00890 K10739 - gmx:100802512 483.026