Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00855 ATGAGAAGCCAGAAAACAGAAGAAGAAAGGATTGAAAAAATAATTCGAAGTCTTCTAAAACTTCCCGAAAATAAAAGATGCATCAACTGCAATCTTTTGGGACCACAATATGTGTGCACAACTTTCTCCACATTTGTCTGCACAAATTGCAGTGGGATACATCGAGAGTTTACTCACAGAGTAAAATCTGTCTCGATGGCTAAATTTAGTCCAGAAGAAGTCTCTGCTCTTCAAGCTGGTGGAAATGAGAGAGCAAATCAGATTTTTCTCAAAGAATGGGATCCTCTTCGCAATTCTAAACCAGATTCTAGTAATATACAGAAACTGCGAGAATTCATCAAGTTTGTGTATGTGGAAAGAAAATACACTGGAGAAAGTAGCACTAGCACTCTTTCTAGGATTAGATTGAGTGAGAAGGAGCCTAAGAGAAGTGGTTCATTTCGTTTAGAGTTCAGAACTCCACATTCAAGTCCTGGTCCTACTCCAAGAAGTGATGACAAGAATTTGAGATATTTGTACGATGAAAGCAGAAGCCCTAGATATGCTCAAAGGTATTCAAGAAATGGTGGCCAGATCAGAAGTCCTATACAAATTGAAGTTGTTGATGACAGGTACAAAGATGATGAACGTAGAAATAGAAGACTTGCAAATATAGAAGCAAAGATGAAGAAAAATTCAAGTGATGATCTCAAGAAAGTTGAAAACCCCCAACTCCCTGTTATTGCAGCGCCTTTGGGTGATGTATCAAAGGAGAAAGCTCAACCCCTACAAATCAAACCTCCTGGTGGCAAGGTTTCTGTTGAGAAAAAACCATCTGAGCAAAAAAATAATAATCCAGAAACACCACCACCACCTATAGCACAACCAAATGAAAATAACTGGGCCATATTTGAAGCTTCAACAGAGGACAATGTTCCTAAAACTCCACCAAACACAAGAACCTCTTATCCTTCTACAGAAAAGGCACCATCAACAAAAAATCCTATAGACCTTTTACTTTCTGAATTGTCAGGTCCTGTGACTCCAATGAATGGTGGCATGCCACAAGTTCCAAGTAGTGTTAATAATGATCCAACAACTACAACAGTACAAAATGCTATTACTTGGGACTTTCCACCTACTTCAGCAGGGAAAACAACTGCATCATCCAACAATACTAGTGTTTGGCCATGCACATCAACCCCAGCCACTGAACCAGCACAACCTTCTAATGAAGCTCCTCCACATACTGAAGTTTGTCATGCTCATAATCCATCAAGTGTGCAGTATCTTCCATCTGTATCGGTAGGTTTTAGTTCAACTACACAACCATCAAATTCATCAGTCATAGATGTAGCTTCAAATAATAAGCCATCAGTAACTCCAAGTGAAAAAGATCCTTCCTGGTCTTTTACTGAACAACCTTCTCAAACTACCTCAAATCCCACTCAAGAAACCAAATCTGATCCTAGTAAAGTGGAAAATAAGGCTAGTGGAAGACATGAAATTCCAGAGAACCTTTTTACACCAAGCTATTTATCTGGGCAAGCACCCCTTCCAAATTGGCAAAATGTTCAACCTTCTGGCATGGGATATGGCATGCAATATTATCATAATGCTGTGCCTCCCTCAGCGATTTCAAATTCACCAATGTCTATGAACCCCTTTGATTTAACTGATTCAAGAAATTTAACCCATGTCTCATCGCTTCCTTCTATCACTTCTGTGCGTGGTGCACCACAAGCTCTATCATCTCCTAGAACAGCATTGATGCATACTGCAAGCATGGGGTCTTTGGTGTCTCAGTCTCCAAGTTATACATCCCCAGTTATGGGTGTGTACTTTGATCAAGTTGATAATCAACAGAAACCTCCTAGACCTCAAAGAGCTGAGAGCTTCAATGGTGATATAACTTCTTTTGGATCTGTAGACCCACTTCAACATTCAAATAGAACATTTACGACCTGCAAAAGTTCAATTTCTCTTTCCAATGCAAGAGGAAACCCATTTGACTAG 1995 0.3965 MRSQKTEEERIEKIIRSLLKLPENKRCINCNLLGPQYVCTTFSTFVCTNCSGIHREFTHRVKSVSMAKFSPEEVSALQAGGNERANQIFLKEWDPLRNSKPDSSNIQKLREFIKFVYVERKYTGESSTSTLSRIRLSEKEPKRSGSFRLEFRTPHSSPGPTPRSDDKNLRYLYDESRSPRYAQRYSRNGGQIRSPIQIEVVDDRYKDDERRNRRLANIEAKMKKNSSDDLKKVENPQLPVIAAPLGDVSKEKAQPLQIKPPGGKVSVEKKPSEQKNNNPETPPPPIAQPNENNWAIFEASTEDNVPKTPPNTRTSYPSTEKAPSTKNPIDLLLSELSGPVTPMNGGMPQVPSSVNNDPTTTTVQNAITWDFPPTSAGKTTASSNNTSVWPCTSTPATEPAQPSNEAPPHTEVCHAHNPSSVQYLPSVSVGFSSTTQPSNSSVIDVASNNKPSVTPSEKDPSWSFTEQPSQTTSNPTQETKSDPSKVENKASGRHEIPENLFTPSYLSGQAPLPNWQNVQPSGMGYGMQYYHNAVPPSAISNSPMSMNPFDLTDSRNLTHVSSLPSITSVRGAPQALSSPRTALMHTASMGSLVSQSPSYTSPVMGVYFDQVDNQQKPPRPQRAESFNGDITSFGSVDPLQHSNRTFTTCKSSISLSNARGNPFD 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00855 664 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Viun8g00855 664 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Viun8g00855 664 MobiDBLite consensus disorder prediction 129 169 - -
Viun8g00855 664 MobiDBLite consensus disorder prediction 431 481 - -
Viun8g00855 664 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Viun8g00855 664 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Viun8g00855 664 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Viun8g00855 664 Gene3D Arf GTPase activating protein 1 134 IPR038508 -
Viun8g00855 664 SMART arf_gap_3 8 130 IPR001164 GO:0005096
Viun8g00855 664 MobiDBLite consensus disorder prediction 431 493 - -
Viun8g00855 664 PANTHER ARFGAP/RECO-RELATED 1 663 IPR044820 GO:0005096
Viun8g00855 664 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Viun8g00855 664 CDD ArfGap_AGFG 12 122 - -
Viun8g00855 664 MobiDBLite consensus disorder prediction 293 325 - -
Viun8g00855 664 MobiDBLite consensus disorder prediction 135 149 - -
Viun8g00855 664 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Viun8g00855 664 MobiDBLite consensus disorder prediction 244 416 - -
Viun8g00855 664 MobiDBLite consensus disorder prediction 346 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00855 Viun-Chr8 8043903 8048974 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00855 15 122 C2H2 Transcription Factor Family AT4G05330 35.965 9.66e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00855 - - vun:114194797 1344.72