Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00848 ATGGAGCGGCCTGGGAGCTTAAATGGCAGTCAGCATGTGATAGAAATAGCAGGGAGTTCCGATGCTTCTACTTCAACTGCGACACATCATAATAGCAATTTTAATGGCACAGATGTTACGGTACACGAAGAAAGAGTTACCGGTGCAAGGACGCCTCTATCTCATCCTTCGGTTTCAGTCGCTAGTTTATCAAATGGGTCTAATAGTCGGAATTCCTCATTCATGAGACGCGGGGATACTCGTAGGAATAGGAGTCCGGTGCATTCGGGGTTGTGGATATCGATTGAGCTGGTCCTCTTAGTGAGCCAGATTGTTGCATCTATCGTTGTTTTATCTTTGTCAAGGCATGAACGTCCTCGTACTCCATTGTTTCAATGGATCATTGGTTATGCTTCCGGATGTGTTGCTACCCTCCCTCTGCTTTATTGGCGGTATTATCATCATAACCATACGAGAGAGCAGGATTCATCTCAATCAAGGCAAACATCTCCTCGGATTAATGATCCTTCAGGGACACTCCTTTTCAGTTCCAGAACAAGTGGTGGAGAAGATGGTCAGGTTGTTGCATCCTCCAGAAGCAATCAAGCTTCTGTGTTGATGAATAGAAGAATGAAGACTCTAGTGGAATACTTCAAAATATCTTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCGTCTGCTGATGAAGCTCCTAACTTGTACAGGTTATGTATAGTGTTTCTTGCCTTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTCCCATGTATAATTTCCATCCTTGGGGTTAGAGAGGACATGTCTCAAAACAGAGGGGCAACTTCTGAATCTATTAATGCTTTGCCAACTTACAAGTTCAAGATGAAGAAAAATAAAAGAAATGGAGAAGGCAACTCAACTGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAAGAGCGAGTAATATCTGGAGAAGATGCAGTATGCTGCATCTGTCTGGCAAAGTATGAAAATAACGATGAGTTGAGGGAATTGCCTTGTTCTCATCTTTTTCACAAAGATTGTGTGGATAAATGGTTGAAGATAAATTCATTATGCCCCCTTTGCAAGAATGATGTTGGTGAAAATTTAACAGGATTGGTCTCAAGTGAAGATGCCAGCCAACACCGGAGTGAGAGCAGGATTGAGAATGGCCTCGCGAATACCTCACTTTAG 1248 0.4263 MERPGSLNGSQHVIEIAGSSDASTSTATHHNSNFNGTDVTVHEERVTGARTPLSHPSVSVASLSNGSNSRNSSFMRRGDTRRNRSPVHSGLWISIELVLLVSQIVASIVVLSLSRHERPRTPLFQWIIGYASGCVATLPLLYWRYYHHNHTREQDSSQSRQTSPRINDPSGTLLFSSRTSGGEDGQVVASSRSNQASVLMNRRMKTLVEYFKISLDCFFAVWFVVGNVWIFGGHSSADEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDMSQNRGATSESINALPTYKFKMKKNKRNGEGNSTEGGVVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINSLCPLCKNDVGENLTGLVSSEDASQHRSESRIENGLANTSL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00848 415 FunFam E3 ubiquitin-protein ligase 323 389 - -
Viun8g00848 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 387 IPR013083 -
Viun8g00848 415 SMART ringv_2 339 381 IPR011016 GO:0008270
Viun8g00848 415 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 384 - -
Viun8g00848 415 MobiDBLite consensus disorder prediction 19 85 - -
Viun8g00848 415 ProSiteProfiles Zinc finger RING-type profile. 340 381 IPR001841 -
Viun8g00848 415 MobiDBLite consensus disorder prediction 52 74 - -
Viun8g00848 415 Pfam Ring finger domain 340 381 IPR001841 -
Viun8g00848 415 MobiDBLite consensus disorder prediction 19 40 - -
Viun8g00848 415 MobiDBLite consensus disorder prediction 395 415 - -
Viun8g00848 415 SMART ring_2 340 380 IPR001841 -
Viun8g00848 415 SUPERFAMILY RING/U-box 332 387 - -
Viun8g00848 415 CDD RING-H2_EL5-like 340 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00848 Viun-Chr8 7919422 7926811 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00848 76 387 C3H Transcription Factor Family AT1G80400 58.805 5.95e-140 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00848 - - gmx:100778728 719.924