Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00831 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTAGTGAAAAGGGATTTGAAGGCCTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTGTCGTCGGACCCTGTTGCTATTGATGCACCCGGAGGATTTCTGTTCGAGTGGTGGTCTGTTTTCTGGGATATATTTATTGCCAGGACCAATGAGAAGCACTCCGAGGTTGCTGCATCTTATATCGAGACACAATTTATGAAGGCTAGAGAGCAACAACAACAGCAGCAACAACAACAGCAACCACAACCTCAGCAGTCACAACATCAGCAGCAACAGCAGCAGCAACAACAACACATGCAGATGCAACAAATGCTGTTACAGAGGGCTCAGCAACAACAACAGCAGCAGCAACAGCAGCAGCAACAACCACAACAGCAACAGCAACAGCAACAACAGCCACAACATCAGCAGCCACCACCTCAGCAGCAGCAGGGTAGGGATAGGACCCATCTCTTAAATGGTGGTACCAATGGGTTGGTTGGAAACCCTAGCACTGCAAATGCACTGGCAACAAAGATGTACGAGGAAAGGTTAAAACTTCCCCTTCAAAGGGACTCTTTGGAAGATGCAGCAATGAAGCAAAGATTTGGAGACCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTACCGGCCAGCCTTCTGGCCAAGTTTTGCATGGTGCTGCTGGTGCAATGTCTCCACAAGTTCAAGGTCGTAGTCAACTACCAGGGTCTACTCCGAGTGAGATCAATTCCGTTATAAATCCCAGAGCTGCAGGTCCTGAAGGATCATTGATAGCAATGCCTGGTTCAAATCAAGGTAGCAACAATTTAACTCTAAAAGGGTGGCCACTAACGGGTTTGGAGCAACTACGTTCTGGTATACTTCAGCAACAGAAACCTCCTTTCATACAGTCTCCTCAAACATTTCATCAACTTCCAATGTTGACACCACAACATCAGCAACATCTAATTCTGGCACAACAAAATTTAGCATCACCATCTGGCAGTGATGACAATAGAAGGCTCAGAATGCTGCTGAATAACAGGAATATGGGTGTAGCTAAGGATGGTCTTTCGAACCCTGTGGGTGATGTAGTATCAAATGTTGGATCACCTCTTCAAGCAGGTGGCCCTGCTTTCCAGCGTAGTGATACAGAGATGCTAATGAAGTTGAAACTGGCACACTTACACCAACATCAACAACAGCAGAATGCCAATCCACAGCAGCAGCAACAGCAACTGCAACAACATACTATATCAAATCAGCAATCTCAGTCCTCAAATCATAACATGCATCAACAGGATAAAATGGGGGCAGGTGGTGGTAGTGTCAATGTGGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCCAAAAGCCAGACTGGGAGAAAGAGGAAGCAGCCTGCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCTAATACAGCTGGCCCATCTCCAAGTTCAGCACCCTCGACTCCCTCAACTCATACACCCGGTGATGTGATGTCAATGCCTGCTTTACCTCATAGTGGTAGTTCTTCGAAGCCATTGATTATGTTTGCTGCCGATGGTGCTGGCACTCTTACATCACCTTCAAACCAGTTGGCTGATGTGGATCGTTTTGTGGAGGATGGATCACTTGATGATAATGTTGAGTCTTTTTTATCCCATGATGATAATGACCCGAGGGATACTGTTGGTCCTTGTATGGATGTAAGCAAAGGTTTTACATTTTCTCAGGTGAATTCTGTACGTGCAAGCACTAACAAAGTTGTCTGTTGCCATTTCTCGTCTGATGGGAAATTGCTTGCTAGTGGTGGACATGACAAAAAGGCTGTTTTATGGTTCACAGATACTCTAAAACAAAAGGCTACTCTTGAAGAGCATGCTTCTTTAATCACTGATGTCCGATTCAGTCCAAGCATGCCTCGCCTTGCAACATCTTCGTATGACAGAACTGTCAGGGTGTGGGATGTTGATAATCCTGGATATACGCTTCGTAGTTTTACTGGTCATTCTGCATCTGTTATGTCACTAGATTTTCACCCTAACAAAGATGATCTTATCTGCTCTTGTGATGTCGATGGTGAGATACGATATTGGAGCATTAAGAATGGCAGTTGTGCTAGAGTCTCAAAGGGTGGCACTGCCCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTAGCTGCAGCTGCTGAGAATGTTGTTTCAATACTTGATGTGGAAACACAAGTATGCCGATATTCATTAAAGGGACATACAAAATCAATACATTCTGTGTGTTGGGATCCTTCTGGGGAGTTCCTGGCATCTGTCAGCGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAGTGTGTTCACGAGCTTAGCTGCAATGGCAATAAATTTCACTCATGTGTTTTCCATCCAACATATTCTTCGCTTTTGGTAGTTGGTTGTTACGAGTCATTGGAGCTGTGGAACATGACTGAGAACAAGACAATGACTCTATCCGCTCATGAAGGTCTTATTGCCGCATTGGCGGTTTCTACTGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTGAAGCTGTGGAAGTGA 2673 0.4516 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQFMKAREQQQQQQQQQQPQPQQSQHQQQQQQQQQHMQMQQMLLQRAQQQQQQQQQQQQQPQQQQQQQQQPQHQQPPPQQQQGRDRTHLLNGGTNGLVGNPSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGDQLLDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQGRSQLPGSTPSEINSVINPRAAGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGILQQQKPPFIQSPQTFHQLPMLTPQHQQHLILAQQNLASPSGSDDNRRLRMLLNNRNMGVAKDGLSNPVGDVVSNVGSPLQAGGPAFQRSDTEMLMKLKLAHLHQHQQQQNANPQQQQQQLQQHTISNQQSQSSNHNMHQQDKMGAGGGSVNVDGSMSNSFRGNDQVSKSQTGRKRKQPASSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSGSSSKPLIMFAADGAGTLTSPSNQLADVDRFVEDGSLDDNVESFLSHDDNDPRDTVGPCMDVSKGFTFSQVNSVRASTNKVVCCHFSSDGKLLASGGHDKKAVLWFTDTLKQKATLEEHASLITDVRFSPSMPRLATSSYDRTVRVWDVDNPGYTLRSFTGHSASVMSLDFHPNKDDLICSCDVDGEIRYWSIKNGSCARVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQVCRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYESLELWNMTENKTMTLSAHEGLIAALAVSTVNGLVASASHDKFVKLWK 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00831 890 MobiDBLite consensus disorder prediction 140 182 - -
Viun8g00831 890 FunFam Transcriptional corepressor LEUNIG 734 890 - -
Viun8g00831 890 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 691 729 - -
Viun8g00831 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 606 637 IPR001680 GO:0005515
Viun8g00831 890 SMART WD40_4 599 638 IPR001680 GO:0005515
Viun8g00831 890 SMART WD40_4 766 804 IPR001680 GO:0005515
Viun8g00831 890 SMART WD40_4 810 849 IPR001680 GO:0005515
Viun8g00831 890 SMART WD40_4 641 680 IPR001680 GO:0005515
Viun8g00831 890 SMART WD40_4 684 724 IPR001680 GO:0005515
Viun8g00831 890 SMART WD40_4 851 890 IPR001680 GO:0005515
Viun8g00831 890 ProSitePatterns Trp-Asp (WD) repeats signature. 667 681 IPR019775 -
Viun8g00831 890 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 648 683 - -
Viun8g00831 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 858 890 IPR001680 GO:0005515
Viun8g00831 890 Pfam LisH 10 36 IPR006594 GO:0005515
Viun8g00831 890 MobiDBLite consensus disorder prediction 462 521 - -
Viun8g00831 890 Pfam WD domain, G-beta repeat 605 637 IPR001680 GO:0005515
Viun8g00831 890 Pfam WD domain, G-beta repeat 853 890 IPR001680 GO:0005515
Viun8g00831 890 Pfam WD domain, G-beta repeat 687 724 IPR001680 GO:0005515
Viun8g00831 890 Pfam WD domain, G-beta repeat 769 803 IPR001680 GO:0005515
Viun8g00831 890 Pfam WD domain, G-beta repeat 645 680 IPR001680 GO:0005515
Viun8g00831 890 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 890 - -
Viun8g00831 890 CDD WD40 606 890 - -
Viun8g00831 890 MobiDBLite consensus disorder prediction 243 262 - -
Viun8g00831 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 773 813 IPR001680 GO:0005515
Viun8g00831 890 MobiDBLite consensus disorder prediction 90 114 - -
Viun8g00831 890 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 858 890 - -
Viun8g00831 890 SMART Lish 8 40 IPR006594 GO:0005515
Viun8g00831 890 Gene3D - 739 890 IPR015943 GO:0005515
Viun8g00831 890 MobiDBLite consensus disorder prediction 413 533 - -
Viun8g00831 890 Coils Coil 117 140 - -
Viun8g00831 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 648 683 IPR001680 GO:0005515
Viun8g00831 890 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Viun8g00831 890 ProSiteProfiles Trp-Asp (WD) repeats profile. 691 733 IPR001680 GO:0005515
Viun8g00831 890 SUPERFAMILY WD40 repeat-like 600 890 IPR036322 GO:0005515
Viun8g00831 890 Gene3D - 587 738 IPR015943 GO:0005515
Viun8g00831 890 MobiDBLite consensus disorder prediction 413 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00831 Viun-Chr8 7471248 7489394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00831 685 889 Miscellaneous Gene Families AT5G08390 26.190 9.22e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Viun8g00831 WD40 0.08 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00831 - - gmx:100779972 1301.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00831 8 7471248 7489394 Viun9g03024 9 38023959 38032403 PCT