Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00830 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTAGTGAAAAGGGATTTGAAGGCCTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTGTCGTCGGACCCTGTTGCTATTGATGCACCCGGAGGATTTCTGTTCGAGTGGTGGTCTGTTTTCTGGGATATATTTATTGCCAGGACCAATGAGAAGCACTCCGAGGTTGCTGCATCTTATATCGAGACACAATTTATGAAGGCTAGAGAGCAACAACAACAGCAGCAACAACAACAGCAACCACAACCTCAGCAGTCACAACATCAGCAGCAACAGCAGCAGCAACAACAACACATGCAGATGCAACAAATGCTGTTACAGAGGGCTCAGCAACAACAACAGCAGCAGCAACAGCAGCAGCAACAACCACAACAGCAACAGCAACAGCAACAACAGCCACAACATCAGCAGCCACCACCTCAGCAGCAGCAGGGTAGGGATAGGACCCATCTCTTAAATGGTGGTACCAATGGGTTGGTTGGAAACCCTAGCACTGCAAATGCACTGGCAACAAAGATGTACGAGGAAAGGTTAAAACTTCCCCTTCAAAGGGACTCTTTGGAAGATGCAGCAATGAAGCAAAGATTTGGAGACCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTACCGGCCAGCCTTCTGGCCAAGTTTTGCATGGTGCTGCTGGTGCAATGTCTCCACAAGTTCAAGGTCGTAGTCAACTACCAGGGTCTACTCCGGATATAAAGAGTGAGATCAATTCCGTTATAAATCCCAGAGCTGCAGGTCCTGAAGGATCATTGATAGCAATGCCTGGTTCAAATCAAGGTAGCAACAATTTAACTCTAAAAGGGTGGCCACTAACGGGTTTGGAGCAACTACGTTCTGGTATACTTCAGCAACAGAAACCTCCTTTCATACAGTCTCCTCAAACATTTCATCAACTTCCAATGTTGACACCACAACATCAGCAACATCTAATTCTGGCACAACAAAATTTAGCATCACCATCTGGCAGTGATGACAATAGAAGGCTCAGAATGCTGCTGAATAACAGGAATATGGGTGTAGCTAAGGATGGTCTTTCGAACCCTGTGGGTGATGTAGTATCAAATGTTGGATCACCTCTTCAAGCAGGTGGCCCTGCTTTCCAGCGTAGTGATACAGAGATGCTAATGAAGTTGAAACTGGCACACTTACACCAACATCAACAACAGCAGAATGCCAATCCACAGCAGCAGCAACAGCAACTGCAACAACATACTATATCAAATCAGCAATCTCAGTCCTCAAATCATAACATGCATCAACAGGATAAAATGGGGGCAGGTGGTGGTAGTGTCAATGTGGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCCAAAAGCCAGACTGGGAGAAAGAGGAAGCAGCCTGCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCTAATACAGCTGGCCCATCTCCAAGTTCAGCACCCTCGACTCCCTCAACTCATACACCCGGTGATGTGATGTCAATGCCTGCTTTACCTCATAGTGGTAGTTCTTCGAAGCCATTGATTATGTTTGCTGCCGATGGTGCTGGCACTCTTACATCACCTTCAAACCAGTTGGCTGATGTGGATCGTTTTGTGGAGGATGGATCACTTGATGATAATGTTGAGTCTTTTTTATCCCATGATGATAATGACCCGAGGGATACTGTTGGTCCTTGTATGGATGTAAGCAAAGGTTTTACATTTTCTCAGGTGAATTCTGTACGTGCAAGCACTAACAAAGTTGTCTGTTGCCATTTCTCGTCTGATGGGAAATTGCTTGCTAGTGGTGGACATGACAAAAAGGCTGTTTTATGGTTCACAGATACTCTAAAACAAAAGGCTACTCTTGAAGAGCATGCTTCTTTAATCACTGATGTCCGATTCAGTCCAAGCATGCCTCGCCTTGCAACATCTTCGTATGACAGAACTGTCAGGGTGTGGGATGTTGATAATCCTGGATATACGCTTCGTAGTTTTACTGGTCATTCTGCATCTGTTATGTCACTAGATTTTCACCCTAACAAAGATGATCTTATCTGCTCTTGTGATGTCGATGGTGAGATACGATATTGGAGCATTAAGAATGGCAGTTGTGCTAGAGTCTCAAAGGGTGGCACTGCCCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTAGCTGCAGCTGCTGAGAATGTTGTTTCAATACTTGATGTGGAAACACAAGTATGCCGATATTCATTAAAGGGACATACAAAATCAATACATTCTGTGTGTTGGGATCCTTCTGGGGAGTTCCTGGCATCTGTCAGCGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAGTGTGTTCACGAGCTTAGCTGCAATGGCAATAAATTTCACTCATGTGTTTTCCATCCAACATATTCTTCGCTTTTGGTAGTTGGTTGTTACGAGTCATTGGAGCTGTGGAACATGACTGAGAACAAGACAATGACTCTATCCGCTCATGAAGGTCTTATTGCCGCATTGGCGGTTTCTACTGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTGAAGCTGTGGAAGTGA 2682 0.4508 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQFMKAREQQQQQQQQQQPQPQQSQHQQQQQQQQQHMQMQQMLLQRAQQQQQQQQQQQQQPQQQQQQQQQPQHQQPPPQQQQGRDRTHLLNGGTNGLVGNPSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGDQLLDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQGRSQLPGSTPDIKSEINSVINPRAAGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGILQQQKPPFIQSPQTFHQLPMLTPQHQQHLILAQQNLASPSGSDDNRRLRMLLNNRNMGVAKDGLSNPVGDVVSNVGSPLQAGGPAFQRSDTEMLMKLKLAHLHQHQQQQNANPQQQQQQLQQHTISNQQSQSSNHNMHQQDKMGAGGGSVNVDGSMSNSFRGNDQVSKSQTGRKRKQPASSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSGSSSKPLIMFAADGAGTLTSPSNQLADVDRFVEDGSLDDNVESFLSHDDNDPRDTVGPCMDVSKGFTFSQVNSVRASTNKVVCCHFSSDGKLLASGGHDKKAVLWFTDTLKQKATLEEHASLITDVRFSPSMPRLATSSYDRTVRVWDVDNPGYTLRSFTGHSASVMSLDFHPNKDDLICSCDVDGEIRYWSIKNGSCARVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQVCRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYESLELWNMTENKTMTLSAHEGLIAALAVSTVNGLVASASHDKFVKLWK 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00830 893 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 861 893 - -
Viun8g00830 893 Pfam WD domain, G-beta repeat 690 727 IPR001680 GO:0005515
Viun8g00830 893 Pfam WD domain, G-beta repeat 648 683 IPR001680 GO:0005515
Viun8g00830 893 Pfam WD domain, G-beta repeat 856 893 IPR001680 GO:0005515
Viun8g00830 893 Pfam WD domain, G-beta repeat 772 806 IPR001680 GO:0005515
Viun8g00830 893 Pfam WD domain, G-beta repeat 608 640 IPR001680 GO:0005515
Viun8g00830 893 Gene3D - 590 741 IPR015943 GO:0005515
Viun8g00830 893 CDD WD40 609 893 - -
Viun8g00830 893 MobiDBLite consensus disorder prediction 140 182 - -
Viun8g00830 893 ProSiteProfiles Trp-Asp (WD) repeats profile. 776 816 IPR001680 GO:0005515
Viun8g00830 893 Pfam LisH 10 36 IPR006594 GO:0005515
Viun8g00830 893 Gene3D - 742 893 IPR015943 GO:0005515
Viun8g00830 893 ProSitePatterns Trp-Asp (WD) repeats signature. 670 684 IPR019775 -
Viun8g00830 893 ProSiteProfiles Trp-Asp (WD) repeats profile. 609 640 IPR001680 GO:0005515
Viun8g00830 893 ProSiteProfiles Trp-Asp (WD) repeats profile. 651 686 IPR001680 GO:0005515
Viun8g00830 893 SMART WD40_4 687 727 IPR001680 GO:0005515
Viun8g00830 893 SMART WD40_4 769 807 IPR001680 GO:0005515
Viun8g00830 893 SMART WD40_4 602 641 IPR001680 GO:0005515
Viun8g00830 893 SMART WD40_4 854 893 IPR001680 GO:0005515
Viun8g00830 893 SMART WD40_4 813 852 IPR001680 GO:0005515
Viun8g00830 893 SMART WD40_4 644 683 IPR001680 GO:0005515
Viun8g00830 893 MobiDBLite consensus disorder prediction 90 114 - -
Viun8g00830 893 MobiDBLite consensus disorder prediction 416 536 - -
Viun8g00830 893 SMART Lish 8 40 IPR006594 GO:0005515
Viun8g00830 893 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 694 732 - -
Viun8g00830 893 SUPERFAMILY WD40 repeat-like 603 893 IPR036322 GO:0005515
Viun8g00830 893 ProSiteProfiles Trp-Asp (WD) repeats profile. 694 736 IPR001680 GO:0005515
Viun8g00830 893 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 893 - -
Viun8g00830 893 Coils Coil 117 140 - -
Viun8g00830 893 MobiDBLite consensus disorder prediction 465 524 - -
Viun8g00830 893 ProSiteProfiles Trp-Asp (WD) repeats profile. 861 893 IPR001680 GO:0005515
Viun8g00830 893 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Viun8g00830 893 MobiDBLite consensus disorder prediction 416 454 - -
Viun8g00830 893 FunFam Transcriptional corepressor LEUNIG 737 893 - -
Viun8g00830 893 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 651 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00830 Viun-Chr8 7471248 7489394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00830 688 892 Miscellaneous Gene Families AT5G08390 26.190 9.04e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Viun8g00830 WD40 0.08 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00830 - - gmx:100779972 1312.36