Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00785 ATGGTACAGGCAAAGAAGTTCAGAGGAGTGAGGCAACGTCAATGGGGTTCATGGGTCTCAGAAATTCGTCACCCTTTGCTGAAGAGAAGGGTGTGGCTAGGGACATTTGAGACAGCAGAGGCAGCAGCGAGAGCATACGACGAAGCAGCGATTTTGATGAATGGTAGAAACGCGAAGACGAATTTCCCTACAGCACCATCGAAGGAGGGTGAAGGTGGCAGCATTTCCGGTGTGTGTGAAGACCCTTTTTCATCTCCGAGTGTTCTTTCAGAGCGTCTGAGTAGAAAGCTGAAGAAATGCTGCAGAGAGCCTTCTCCTTCGCTGACATGTCTGAGACTAGACGCTGACAATTCCCACATCGGAGTGTGGCAAAAGGGTGCAGGAGCAGACTCGGAGTCGAATTGGATTGTGAGGGTGGAGCTTGGGAAGAAACGTGCAGAGAGTGAGTCAAGTGTGTCAGAAGGGTGCGCACAAAATGATGGTGAAGAAGATGAAGAAGATAGAATTGCGATGCAGATGATTGATGAGCTTCTTAATTGGAACTATCCATGTGGTGGTTCAAGTAATTAA 570 0.4842 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDEAAILMNGRNAKTNFPTAPSKEGEGGSISGVCEDPFSSPSVLSERLSRKLKKCCREPSPSLTCLRLDADNSHIGVWQKGAGADSESNWIVRVELGKKRAESESSVSEGCAQNDGEEDEEDRIAMQMIDELLNWNYPCGGSSN 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00785 189 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Viun8g00785 189 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Viun8g00785 189 MobiDBLite consensus disorder prediction 146 166 - -
Viun8g00785 189 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Viun8g00785 189 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Viun8g00785 189 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Viun8g00785 189 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Viun8g00785 189 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Viun8g00785 189 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 147 - -
Viun8g00785 189 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Viun8g00785 189 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00785 Viun-Chr8 6879493 6880678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00785 1 187 AP2-EREBP Transcription Factor Family AT5G25390 59.788 5.35e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun8g00785 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00785 - - var:108320982 324.324