LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun8g00767	ATGGGTTCAGGAATGTCTAAAGAAGTTATTGATGCTACTTCAGCTGCCCCTTTTGACTTTGAGATCTTGGATAGTGATTCTTACATTGTTAGATCTGTTAGAGCCTCATCCAATCGTGCAAATCCATGGATTGAACCTGAAAGGCTGAAACTTAGACACAGAATTGGTAGAGGCGTCTTTGGTGATGTTTGGTTAGCAACTCATCATCAGTCAACTGAAGATTATGATGAGTGTCATGAAGTTGCTGCTAAGATGTTACATGCAATTGGAGAGGACCACATGAAGACTGTAATAGAGAAGTTCAATGAATTGTATTTTAAGTGCCAAGGAGTTGCTAGCATGTCCTGGCTGCATGGAATTTCAATCTTAGATGGAAGGATTTGCATTATTATGAATTTGTACGCGGGTTCAATTGGTGACAATATTGCAGCACTCAAAGAAGGAGGGATTTCATTGCATGATGCTTTAAGGTATGGAGTCAATCTTGCTCAAGCTGTTCTGGAACTTCACTCTCTAGGGATCCTCATTCTTAATCTTAAACCATTCAATGTTGTTCTCAATGAGAACGATCAAGCAATTTTGGGAGATTTTGGAATTCCTAGTCTTTTGCTTGAGTCCTCATTCTTAAGCACATATATGGATAAGAGGCTTGGAACACCAAATTACATGGCTCCAGAGCAATGGGAACCTGAGGTGAGAGGTCCTATATCGTTTGAAACGGATTCTTGGGGATTTGGTTGTACCATTGTCGAAATGTTGACTGGTAATCAACCTTGGTATGGATGTCCTGTTTCCAGAATATACCAGTCAGTTGTTGAAAATCATGAAAAACCAAATATTCCCAGTGGCCTTCCTCCTTCAGTTGAGAATATCCTCAGTGGATGCTTTGAGTATGATTTGAGGAATCGCCCTTTAATGGTGGATATTCTGAGTGTCTTTCAAAGAGCTCTGAATGAATTGGCCAATGATGGAGAATGGAGATATATGGGAAATGTGAAAGTTAATCCAAAATCAGATAGCAGTGGCTACACAAAGTGGTTCCTCTCAAAGGATCATCTTCAGGTAGGTGACATGGTCCGAACCAGAAAGCTTCCCAATTCATGCAGACCTCAAAACATGGACATCCCAGAAGGAGCTGTTGTTAGTTTAGAGTCTAACACAGATCACAGGTTCGCTATTGTGAGGGTCCATGGCTATGACGACCCTATCAGAGTTCATGCATCATCGCTTGAACGTGTCACATCTGGTTTGGTAGCTGGTGATTGGGTATGTTTGAGGGAACAAAACGAGAAGCACTCACATGTGGGCATTCTACACGCCATCAACCGTGATAGTAGTGTATCTGTTGGATTTCTTGGGCTGCACGCTCTGTGGGACGGAAACTCTTCTGAACTAAAAAAGGTGGAACCTTTCTGTGTTGGCCAGTTTGTCAGACTCAAAGACAGCGTTTCATGTCCTCGATTTGAGTGGCGTCGCAAAAGGGGTGGCGCCTGGGCTGCCGGCAGGATCTCATGGATTCTTCCGAATGGAGGTTTGGTTGTGAAATTCCCAGGGATGCTTGATTTTGGCAATGAAGCAAACACCTACATGGCGGATCCCTCTGAGGTTGAAGTGGTTGAGTTCAGGACTTGTCCTGGGATCATAGAAAAGTATGAACATTTAGAGGATCATCACTGGGCAATTAGACCAGTTCTAGTTGCATTTGGTCTATTCACTGCTTTGAAATTTGGCATACTTGTTGGGAAGAAAGTGAGGAGGAACAACAAGGTCAATGCAGTAGAAATTGAAAGTCACTATCTTGGTGGTCAAAATCAGAATGCCAATTCTGCTACTACAACTTCTACTACCACCACAATGAGATCTTCAAATGCTGCGAAACAAGGCAATGCAGCATGGCTTCCTTTAGTTCCTAATGTAATGTTTAAGGAAGCTGGTAACTCATCCAACAGTAGGTAG	1956	0.4254	MGSGMSKEVIDATSAAPFDFEILDSDSYIVRSVRASSNRANPWIEPERLKLRHRIGRGVFGDVWLATHHQSTEDYDECHEVAAKMLHAIGEDHMKTVIEKFNELYFKCQGVASMSWLHGISILDGRICIIMNLYAGSIGDNIAALKEGGISLHDALRYGVNLAQAVLELHSLGILILNLKPFNVVLNENDQAILGDFGIPSLLLESSFLSTYMDKRLGTPNYMAPEQWEPEVRGPISFETDSWGFGCTIVEMLTGNQPWYGCPVSRIYQSVVENHEKPNIPSGLPPSVENILSGCFEYDLRNRPLMVDILSVFQRALNELANDGEWRYMGNVKVNPKSDSSGYTKWFLSKDHLQVGDMVRTRKLPNSCRPQNMDIPEGAVVSLESNTDHRFAIVRVHGYDDPIRVHASSLERVTSGLVAGDWVCLREQNEKHSHVGILHAINRDSSVSVGFLGLHALWDGNSSELKKVEPFCVGQFVRLKDSVSCPRFEWRRKRGGAWAAGRISWILPNGGLVVKFPGMLDFGNEANTYMADPSEVEVVEFRTCPGIIEKYEHLEDHHWAIRPVLVAFGLFTALKFGILVGKKVRRNNKVNAVEIESHYLGGQNQNANSATTTSTTTTMRSSNAAKQGNAAWLPLVPNVMFKEAGNSSNSR	651

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Viun8g00767	651	ProSitePatterns	Protein kinases ATP-binding region signature.	55	84	IPR017441	GO:0005524
Viun8g00767	651	MobiDBLite	consensus disorder prediction	604	623	-	-
Viun8g00767	651	Gene3D	Phosphorylase Kinase; domain 1	28	131	-	-
Viun8g00767	651	Gene3D	Transferase(Phosphotransferase) domain 1	136	344	-	-
Viun8g00767	651	Pfam	Protein tyrosine and serine/threonine kinase	49	311	IPR001245	GO:0004672\|GO:0006468
Viun8g00767	651	SUPERFAMILY	Protein kinase-like (PK-like)	46	312	IPR011009	-
Viun8g00767	651	ProSiteProfiles	Protein kinase domain profile.	49	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Viun8g00767	651	PANTHER	OS06G0639500 PROTEIN	5	646	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun8g00767	Viun-Chr8	6696880	6700987	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun8g00767	25	320	MAP Kinase Kinase Kinase	AT2G17700	24.834	5.66e-19	89.0

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-1	Viun8g00767		PK_Tyr_Ser-Thr	7.9e-29	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun8g00767	-		-	gsj:114393396	1025.39

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Viun8g00767	8	6696880	6700987	Viun8g00767	8	6696880	6700987	ECH
Viun9g03097	9	38471585	38475685	Viun8g00767	8	6696880	6700987	ECH
Viun8g00767	8	6696880	6700987	Viun9g03097	9	38471585	38475685	PCT

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