Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00752 ATGGAGTGGAAACTTTTAACTGGTAGAAGACTAAGTATGGATTCTGAACAGGGAAACTGCAATGGAGTTTTGGGAGATGTGAAAAAGGTTTCAATTGAAGAATCCCTCAACAAATCAAAGAATTCATTAGATATTGGCACATCATCTCAGTGCCAGTTCTTGCAGCTCCCTAAGCATCCTGAAGTAAAAAGGATTGTTAAACTGGCTTACAACAATACGGGGAATTCAATTCTGGCATTGGCATCGAATGGTATTCATCTGGTTTGGCTCTGGCCACGCACTGGCTTTAACTTGGATGGCAAGGCTAGTGTTCAGGTTTGCCCTCAGTTGCAGCAACCAAAGGATGGGTTCCAAGTTATGATCAATGACCTTTCATCTGTCAAATGTGCAAACCCAGTTTCTTGTTTTGCATTATCAAAACAGGGTGGATATGTCATATCAACTTCAGGGGGCATGATCTCTTTGTTCAACATGGTCTCCTATAAGACTCTGAGAACCATCATGTCTCCACCACCTATGGTAACATGTCTTGCTTTCTACCCTGAAGATAACAATATATTTGGTATTGGCTTTGATGACTCCACTTTAAGTATATACAATGTTCGTGATGATCAGGTTTTACAAAAGCTTGAGGGTCACTCTAAAAGAGTTACCACTCTTGCTTTCTCAAGCACTTCCAATATTCTTGTATCTGCTGATGCAAATGCTCAGATCATTCTATGGGATACAAATGGGTGGAAAAAGCTGAAAGATGTAAAATTGCAAATACAAGAAAACCACATGCTAGAATCTGAAACACAAATTCAGTTTCATCCAGATCAAATAAAATTCCTTGTTGTATATTTTGGTCATGTTGCAATCTATGAAACAACAGAACTAAGATGTGTCAATGAGTGGGTTCCAGAAATTCCACAGCTGATCTCTCAAGCAACCTTCTCATCAGATGGTCACATTTTGTATTCCATTTTGGTTGATGGGACAGTCACAATATTTGATGCAACAAATTTTGAAGTTCATTGTAGGATTTGTACCTCATCTTATCTTCCTCCAATTTCAAGTTTGAGCATCTACCCAATTTCCATTGCTGCACATCCACATAAACCAAACCATTTTGTTGTGGGGCTCACAGATGGTAGTGTTTATGTGTTTGAGCCTCAGAAAGGAGGTGGTGATTGGATCAAGAAAAGTCATTGA 1194 0.3911 MEWKLLTGRRLSMDSEQGNCNGVLGDVKKVSIEESLNKSKNSLDIGTSSQCQFLQLPKHPEVKRIVKLAYNNTGNSILALASNGIHLVWLWPRTGFNLDGKASVQVCPQLQQPKDGFQVMINDLSSVKCANPVSCFALSKQGGYVISTSGGMISLFNMVSYKTLRTIMSPPPMVTCLAFYPEDNNIFGIGFDDSTLSIYNVRDDQVLQKLEGHSKRVTTLAFSSTSNILVSADANAQIILWDTNGWKKLKDVKLQIQENHMLESETQIQFHPDQIKFLVVYFGHVAIYETTELRCVNEWVPEIPQLISQATFSSDGHILYSILVDGTVTIFDATNFEVHCRICTSSYLPPISSLSIYPISIAAHPHKPNHFVVGLTDGSVYVFEPQKGGGDWIKKSH 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00752 397 Gene3D - 21 266 IPR015943 GO:0005515
Viun8g00752 397 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 28 394 IPR027728 GO:0006355
Viun8g00752 397 Pfam WD domain, G-beta repeat 205 242 IPR001680 GO:0005515
Viun8g00752 397 Gene3D - 267 397 IPR015943 GO:0005515
Viun8g00752 397 ProSiteProfiles Trp-Asp (WD) repeats profile. 210 251 IPR001680 GO:0005515
Viun8g00752 397 SMART WD40_4 350 384 IPR001680 GO:0005515
Viun8g00752 397 SMART WD40_4 123 157 IPR001680 GO:0005515
Viun8g00752 397 SMART WD40_4 292 332 IPR001680 GO:0005515
Viun8g00752 397 SMART WD40_4 160 200 IPR001680 GO:0005515
Viun8g00752 397 SMART WD40_4 203 242 IPR001680 GO:0005515
Viun8g00752 397 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 210 242 - -
Viun8g00752 397 SUPERFAMILY WD40 repeat-like 127 388 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00752 Viun-Chr8 6482147 6484793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00752 175 306 U-box Gene Family AT2G33340 25.758 3.92e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00752 - - vun:114195532 791.186