Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00750 ATGGGGAAGCCGGCGGGAAAAAAGAAAGATCATGAGGTTCCCGCTCCCGCGACGAGGGCGAACGGTCACCACCCGTCAAAATCATGGGAGGAGAAACGAGGAGTGGCGGCGGCGGTTGTGTCGTCGTCGTCGTCGAAGGCGCTGGACGAGGACACGGCGATGTTCATAAACATGTCGCAGGAGCTACGAGAGGAAGGGAATAGGTTGTTTCAAAGGAAGGACAACGAGGGAGCGATGTTGAAGTACGAAAAGGCGCTGAAGCTTTTGCCGCGGAACCACATCGACGTGGCGCACCTCCACACCAGCATGGCCATATGCTACATGCAGCTGGGGCTAGGCGAGTACCCGCGCGCCATCAGCGAGTGCAACATGGCGCTGCAGGTGTCGCCGCGTTACACCAAGGCGCTGCTGAAGCGGGCCAAGTGCTACGAGGCGCTGAACCGGTTGGACCTGGCGATGCGGGACGTGCGCGTGGTGCTGAATTTGGAGCCCAATAACTCGACGGCGCTGGAGGTTTTGGATAGCTTGAGGGAGACGATGGAGGAGAAGGGGATTGTGATTGACGAGACGGAGATAGCCCTGGCGGCGCTGCAGCAGCATCCGGAGCCGCCGTCGGCGCGGCTGAGGAAGGTGGTGAGGGAGAAGATCAAGAAGAATAGGAAGGAAAACAAGGGGGAGGATGAGGGGAAGGCGAAGAAGATTATCGTTGAAGAGAAGGTTAAGGCTGATAATGTTAGGAAAAAGGATAAAGAGAAATCGGGGAAACTGGAAAAGGGGAAATTGGGCAAGGAAGATAAAGGGAAATTGGCGAAGGAAGAGAAAGGGAAATTGGGGAAGGAAGAGAAAGAGAATTTGGGGAAGGAAGAAAGAGAGAAATTCGGGAAAGAAGAAAAAGGTGGTGTTACTAGGACTGTGAAGTTGATATATGGAGAGGATATTAGATGGGCGCAATTGCCTGTGAATTGTGGAATTAGGTTGGTGAGGGATGTGATAAGGGATAAGTTTCCGGGGGTGAAGGGTGTTCTTGTGAAGTATAAGGACAGGGAGGGTGATTTGGTTACTATAACTAATACTTCTGAATTGAGGCTGGCTGAGACTTGTCATGTTCTTGGATCGATTCGGCTTTATGTGACCAAGGTTGAGCCGGAAGAGGAGCCATTTTATGATGATGGGGTTGTGGCGGATAGTGGAAAGGTGAAGGTGGTTGAGAATGGGAATGGAGTTGTGGGGAAGGGGAGGAGTAGTACTGTGGAGGATTGGCTTGTCCAGTTTGCTAGATTGTTTAAGAATCATGTTGGGTTTGATTCAGATGCGTATTTGGATATTCATGGGATTGGGATGAAGTTGTATTCGGAGGCCATGGAGGATACAGTGACAAGTGAGGCTGCTCAGGAGCTGTTTGAGATTGCTGGGGATAGGTTTCAGGAGATGGCGGCTTTGGCTTTGTTCAATTGGGGGAGTGTGCATATGTCAAGGGCTAGGAGGAGGGTGACTTTTCCGGAGGATGGATCGAGGGATTCTTCGTTTGAGTGTATTCAAGTTGCTTATGAATGGGCACAGAAGGAGTATATAAATGCAGAGAAGAGATTTGGAGAGGCTGTTAGGATCAAACCGGATTTTTATGAAGGGCTTCTTGCTCTAGGGCATCAGCAATTTGAGCAAGCAAGGCTGTGCTGGTGTTATTTGACTGCGACCGAGAAGGATTTAGAAGTCAGCCATTCGGATGAGGTTCTGCAGCTCTTTAACAAGGCTGAGGACAACATGGAGAAAGGCATGATGATGTGGGAAGAGATGGAGGAGCGGCGATTGAATGGACTGTCCAAAACGGATAAGTATAAGGAGCAGCTAGAGAAAATGGGGTTGCATGGTCTTTTCAGGGATGTTTCTGCTGATGAAGCTGATGAACAGGCTGCAAGGATGAGGTTGCAAATATATCTTTTATGGGGCACTTTGTTGTATGAGCGTTCTGTTGTGGAGTTTAAGCTAGGCCTGCCAACATGGGAAGAATGTGTAGAGGTTGCAGTTGAAAAATTTGAATTGGCTGGAGCTTCTACAACTGATATTGGGGTCATGATAAAGAACCATTGTTCTAATGAAACGGCAATGGAAGGGTTCAAAATTGATGAGATAGTGCAAGCTTGGAATGAGATGTATGATGGTTGGCAGTTTGATGTTCCATCATTTCGACTTGAACCACTGTTCCGCCGGCGGGTTCCAAAACTCCACTACATCCTGGAGCAATTTTGA 2247 0.4935 MGKPAGKKKDHEVPAPATRANGHHPSKSWEEKRGVAAAVVSSSSSKALDEDTAMFINMSQELREEGNRLFQRKDNEGAMLKYEKALKLLPRNHIDVAHLHTSMAICYMQLGLGEYPRAISECNMALQVSPRYTKALLKRAKCYEALNRLDLAMRDVRVVLNLEPNNSTALEVLDSLRETMEEKGIVIDETEIALAALQQHPEPPSARLRKVVREKIKKNRKENKGEDEGKAKKIIVEEKVKADNVRKKDKEKSGKLEKGKLGKEDKGKLAKEEKGKLGKEEKENLGKEEREKFGKEEKGGVTRTVKLIYGEDIRWAQLPVNCGIRLVRDVIRDKFPGVKGVLVKYKDREGDLVTITNTSELRLAETCHVLGSIRLYVTKVEPEEEPFYDDGVVADSGKVKVVENGNGVVGKGRSSTVEDWLVQFARLFKNHVGFDSDAYLDIHGIGMKLYSEAMEDTVTSEAAQELFEIAGDRFQEMAALALFNWGSVHMSRARRRVTFPEDGSRDSSFECIQVAYEWAQKEYINAEKRFGEAVRIKPDFYEGLLALGHQQFEQARLCWCYLTATEKDLEVSHSDEVLQLFNKAEDNMEKGMMMWEEMEERRLNGLSKTDKYKEQLEKMGLHGLFRDVSADEADEQAARMRLQIYLLWGTLLYERSVVEFKLGLPTWEECVEVAVEKFELAGASTTDIGVMIKNHCSNETAMEGFKIDEIVQAWNEMYDGWQFDVPSFRLEPLFRRRVPKLHYILEQF 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00750 748 Gene3D - 302 379 - -
Viun8g00750 748 SUPERFAMILY TPR-like 54 178 IPR011990 GO:0005515
Viun8g00750 748 MobiDBLite consensus disorder prediction 1 17 - -
Viun8g00750 748 Gene3D Tetratricopeptide repeat domain 51 193 IPR011990 GO:0005515
Viun8g00750 748 SUPERFAMILY CAD & PB1 domains 302 388 - -
Viun8g00750 748 ProSiteProfiles TPR repeat profile. 59 92 IPR019734 GO:0005515
Viun8g00750 748 MobiDBLite consensus disorder prediction 1 34 - -
Viun8g00750 748 SMART tpr_5 59 92 IPR019734 GO:0005515
Viun8g00750 748 SMART tpr_5 97 132 IPR019734 GO:0005515
Viun8g00750 748 SMART tpr_5 133 166 IPR019734 GO:0005515
Viun8g00750 748 CDD PB1 304 377 - -
Viun8g00750 748 MobiDBLite consensus disorder prediction 246 295 - -
Viun8g00750 748 ProSiteProfiles PB1 domain profile. 302 380 IPR000270 GO:0005515
Viun8g00750 748 Pfam PB1 domain 302 378 IPR000270 GO:0005515
Viun8g00750 748 SMART PB1_new 302 380 IPR000270 GO:0005515
Viun8g00750 748 PANTHER PROTEIN CLMP1 1 746 IPR044517 -
Viun8g00750 748 ProSiteProfiles TPR repeat profile. 133 166 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00750 Viun-Chr8 6464732 6468928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00750 49 182 Calmodulin-binding Proteins AT3G25230 28.671 3.21e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00750 K26538 - mnt:112092242 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00750 8 6464732 6468928 Viun9g03112 9 38613584 38618432 PCT