Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00743 ATGAGAAACAATTTGGTGACGATGCGGAGAGAGAGAGCATTGTTCCTGCTACTGCTACTTCTACTTCTTCTCCACCATATTTGTGCCACCAAGGCCCACAAAAAACACGTTTGTCCCCCTTCTTCGTGTGGCAAAATCAGCAACATCACTTATCCATTTCGATTAAAAGGCGACCCAGAGAAGTGTGGTGAGAAAAGTTATGAGCTTGGTTGTGAAAATAATGTTACGGTGTTGTATATGAACTCAGAAGAATTCCATGTGGAGGCAATAAATTACAAGAACTACACAGTGAGAGTGGTTGACCCTGCACTTCAACTCGGTAACTGCTCCTCCCTTCCTCTGAGTTCTCTCTCTCGCTCCAATTTCTCTGATACTTACTCTTACAACCGTACGGGTTCATACCAAGCCAGTCTAGATCCGGGTATTGATGGGGAATCTCTGATTTTCGAGCATATAGTGTTTCTGAGTTGTAACCATTCGGTGAGAGAGAATGGGAAGTATGTGAAAACAGAAGAGTACGTGAAGTGGGACTCAAAGGGCTATGCATATGCTGTTGTTGGTGACCTGAAAGCAGAGGACATTGAAGTTGGGTGTGACATAAAACTTGTTGCTCCAACATCTTTCACCACTTTCAATAACCATTCCTACACTTCCATGCACAGCAGCTTGGCCTATGGATTTCAGATTTCTTGGGTACAACTCGCCTGTGATAATTATTGTCCACATGGATTCTGCTATTTCGACTCTTCTAAACAGAAGATCCATCACTTTTCCTTTACAACCTGGATGACCTTGTTGATCATGATTTTCATATGTAAATGGAGGAAAAGACATGCATCAACATATGAAAATATTGAAAATTACTTAGAACAAAATCACTTGGTGCCTATCAAATACTCACACAAGGAAATTAAGAACATGACCGAAGATTACAAAGAGAAGTTAGGTGAAGAAGGATTTGGCTCCGTGTTTAAGGCAAAGTTGCGGAGCGGACCTTCTGTGGCAATCAAAATGTTAGGGAAATCCAAAGGAAATGGACAAGATTTTATCAATGAAGTTGCAACCATTGGAAGAATACATCATCAAAATGTAGTACAATTAATTGGATTTTGTGTTAGTGGCTCAAAACGCGCTCTTGTATATGAATTCATGCCCAATGGATCTCTTGATAAACTTATATTTTCAAGAGATGGAAGTATACATTTAAGCTATGAAAAAATATATAATATATCAGTTGGAGTGGCTCGTGGGATTGCCTATCTCCATCATGGGTGTGAGATGCAGATTTTGCATTTTGATATCAAACCCCATAACATTTTATTGGATGAAAACTTCATCCCAAAGATTTCTGACTTTGGACTAGCAAAGTTATATCCAATAAATAATAGCATTGTCACAATGACAGCAGCAAGAGGAACCATTGGATATATGGCTCCTGAATTGTTTTACAATAATATTGGAGGAATATCCCACAAAGCTGATGTATATAGCTTCGGAATGTTGTTGATGGAGATGGCAAGTAAGAGGAAGAATCTAAATCTCCATGTAGAACACTCAAGTCAACTTTACTTTCCCCTTTGGATATATAATCATATTGGAGAAGAGAGAGATATAGATATAAATGATTTGACCGAAGAGGAAAAGATAATAGTAAAGAAAATGATTATAGTTGCACTTTGGTGTATACAATTAAAACCAAACGATCGTCCCTCAATAAATAGAGTAGTGAAAATGCTTGAAGGAGACATTGAAGATTTGGAAATACCTCCAAAACCTACGTTATTTCCTGATGAAATGGGTCTAGAGGATCAAACTACCAGTTCTATCTAA 1830 0.3836 MRNNLVTMRRERALFLLLLLLLLLHHICATKAHKKHVCPPSSCGKISNITYPFRLKGDPEKCGEKSYELGCENNVTVLYMNSEEFHVEAINYKNYTVRVVDPALQLGNCSSLPLSSLSRSNFSDTYSYNRTGSYQASLDPGIDGESLIFEHIVFLSCNHSVRENGKYVKTEEYVKWDSKGYAYAVVGDLKAEDIEVGCDIKLVAPTSFTTFNNHSYTSMHSSLAYGFQISWVQLACDNYCPHGFCYFDSSKQKIHHFSFTTWMTLLIMIFICKWRKRHASTYENIENYLEQNHLVPIKYSHKEIKNMTEDYKEKLGEEGFGSVFKAKLRSGPSVAIKMLGKSKGNGQDFINEVATIGRIHHQNVVQLIGFCVSGSKRALVYEFMPNGSLDKLIFSRDGSIHLSYEKIYNISVGVARGIAYLHHGCEMQILHFDIKPHNILLDENFIPKISDFGLAKLYPINNSIVTMTAARGTIGYMAPELFYNNIGGISHKADVYSFGMLLMEMASKRKNLNLHVEHSSQLYFPLWIYNHIGEERDIDINDLTEEEKIIVKKMIIVALWCIQLKPNDRPSINRVVKMLEGDIEDLEIPPKPTLFPDEMGLEDQTTSSI 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00743 609 Pfam Wall-associated receptor kinase galacturonan-binding 38 101 IPR025287 GO:0030247
Viun8g00743 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Viun8g00743 609 FunFam serine/threonine-protein kinase PBS1-like 277 383 - -
Viun8g00743 609 Gene3D Phosphorylase Kinase; domain 1 271 383 - -
Viun8g00743 609 PANTHER RUST RESISTANCE KINASE LR10-RELATED 273 598 IPR045874 GO:0004672
Viun8g00743 609 SMART serkin_6 309 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00743 609 FunFam PR5-like receptor kinase 384 591 - -
Viun8g00743 609 Gene3D Transferase(Phosphotransferase) domain 1 384 587 - -
Viun8g00743 609 Pfam Protein kinase domain 312 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00743 609 ProSiteProfiles Protein kinase domain profile. 309 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00743 609 SUPERFAMILY Protein kinase-like (PK-like) 294 580 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00743 Viun-Chr8 6316529 6322638 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00743 16 594 Receptor kinase-like Gene Family AT5G38260 35.227 1.38e-112 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g00743 Pkinase 5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00743 - - vun:114195573 955.281