Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00742 ATGATGTGGAGAGAGACAACATTGTTGGTGGTACTGCTGCTTCTAATCCACAGAAGTCATGCTCGTTGTCTTCCTTCTTCCTGCGGCAACATCACCCACGTCTCTTATCCATTTCGATTACAAGCCGACCCAGAGAAGTGTGGTAACAAAAGGTATGAGCTTGTTTGTGAGAACAATGTTACGGTGTTGTATCTGCACTCTGCAAAATACCATGTTCAGGCAATCAACTACAACAACTACACCGTGAGAGTGGTTGACCCTGCAATTCAACACCACAATTGCTCCTCCCTTCCTCTGCGTTCTCTCTCTCGCTCCAATTTCTCTGATACTTACGATGACTACACGGATCCATACCAAGCCGGTCTAAGAGCATATGGTAATTGGAAAGCTCTGAGTTTCGAGCATACAGTGTTTCTGAACTGTAACCATTCATTGAGAGGGAATGGGAAGTATGTGGAAACAGAAAAGTGCGTGAAGTGGGACTCAAAGGGATATGCATATGCTGTTGGTGGTGATCTAAAAGCAGAGGACTTTGAAGTTGGCTGTGACGTAAAGCTTGTTGCTCCAACGTCTTTGTGGAGTTTCAATAATCATTCCTACGCTTCCATGCACAGGGCATTGGCTTATGGATTTGAGATTTCATGGGTACAACTCGTCTGCGAGAATCATTGTCGACTCTCACCAAGCGATTGCTATTTCGACTATTCTAGGCGGAAGCTTAAATGCTCCTTTGGTATACTGCAAGTGCTGATACTGCAAGCATCAAGAATTTCCCAAATTTTTATCATGGCGTGGGCTTGCAAAATTGTGTTTGGGGTGCCACTGATTGTTGCACTTGTCATTTGTAAATGGAGGAAAAGACATGCATCAATGTTTGAAAATATTGAAAATTACCTTGAACAAAATAGTTTGGCACCTATTAGATACTCATACAAGGAAATCAAGAAAATGACAGGAAGTTTCAAAGAAAAGTTAGGTGAAGGAGCATTTGGCTCTGTGTTTAAGGCAAAGCTGCGTAGTGGACCTTTTGTAGCAATTAAAATGTTAGGCAAATCCAAAGGAAATGGACAAGATTTTATCAATGAAGTTGCAACCATTGGAAGAATACATCATCAAAATGTGGTACAATTAATTGGATTTTGTGTTAGTGGGTCAAAACGTGCTCTTGTGTATGAATTCATGTCTAATGGATCTCTTGATAAAATTATATTTTCAAAAGAAGGAAGTGAACAATTAAGCTATGAAAAGATATATGATATATCAGTTGGAGTGGCTCGTGGGATTGCTTATCTTCATCATGGATGTGAGATGCAAATTTTACATTTTGATATCAAACCCCATAATATCTTATTAGATGAAAACTTTATTCCAAAGATTTTTGACTTTGGATTAGCAAAGTTACATCCAATAGAAAATAGCATTGTGACAATGACTGCAGCAAGAGGAACCATTGGATATATGGCTCCGGAGTTGTTTTACAAAAATATTGGAGGAGTATCCCATAAGGCTGATGTTTATAGCTTTGGAATGTTTTTGATGGAAATGGCAAGCAAGAGGAAGAACCTAAATCCACATGCAGAGCGATCAAGTCAAATGTACTTTCCATTTTGGATCTATGATCATATTAGAGAAGAAGAAAATATAGATATACAGGATTTGACTGAAGAGGAAAAGAAAATAGCAAAGAAGATGATCATAGTTGCACTTTGGTGTATACAATTGAAACCAAGTAATCGTCCCTCAATGAATAAAGTAGTAAAAATGTTGGAAGGAAATATTGAAGACTTGGAAATACCTCCAGAACCTACTCTATATCCTGATGAAATGAGTACAAATGATCAAACAATAAATTCAGCATCCACGACACATTCTCTTAACTATTTCATGTAA 1890 0.3836 MMWRETTLLVVLLLLIHRSHARCLPSSCGNITHVSYPFRLQADPEKCGNKRYELVCENNVTVLYLHSAKYHVQAINYNNYTVRVVDPAIQHHNCSSLPLRSLSRSNFSDTYDDYTDPYQAGLRAYGNWKALSFEHTVFLNCNHSLRGNGKYVETEKCVKWDSKGYAYAVGGDLKAEDFEVGCDVKLVAPTSLWSFNNHSYASMHRALAYGFEISWVQLVCENHCRLSPSDCYFDYSRRKLKCSFGILQVLILQASRISQIFIMAWACKIVFGVPLIVALVICKWRKRHASMFENIENYLEQNSLAPIRYSYKEIKKMTGSFKEKLGEGAFGSVFKAKLRSGPFVAIKMLGKSKGNGQDFINEVATIGRIHHQNVVQLIGFCVSGSKRALVYEFMSNGSLDKIIFSKEGSEQLSYEKIYDISVGVARGIAYLHHGCEMQILHFDIKPHNILLDENFIPKIFDFGLAKLHPIENSIVTMTAARGTIGYMAPELFYKNIGGVSHKADVYSFGMFLMEMASKRKNLNPHAERSSQMYFPFWIYDHIREEENIDIQDLTEEEKKIAKKMIIVALWCIQLKPSNRPSMNKVVKMLEGNIEDLEIPPEPTLYPDEMSTNDQTINSASTTHSLNYFM 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00742 629 FunFam PR5-like receptor kinase 394 600 - -
Viun8g00742 629 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Viun8g00742 629 Coils Coil 543 563 - -
Viun8g00742 629 Gene3D Phosphorylase Kinase; domain 1 293 393 - -
Viun8g00742 629 FunFam serine/threonine-protein kinase PBS1-like 287 393 - -
Viun8g00742 629 PANTHER RUST RESISTANCE KINASE LR10-RELATED 290 610 IPR045874 GO:0004672
Viun8g00742 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Viun8g00742 629 Pfam Protein kinase domain 322 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00742 629 Gene3D Transferase(Phosphotransferase) domain 1 394 598 - -
Viun8g00742 629 ProSiteProfiles Protein kinase domain profile. 319 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00742 629 Pfam Wall-associated receptor kinase galacturonan-binding 23 86 IPR025287 GO:0030247
Viun8g00742 629 SUPERFAMILY Protein kinase-like (PK-like) 303 590 IPR011009 -
Viun8g00742 629 SMART serkin_6 319 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00742 Viun-Chr8 6301323 6308466 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00742 2 604 Receptor kinase-like Gene Family AT1G66910 34.646 1.40e-110 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g00742 Pkinase 9.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00742 - - vum:124829704 950.658