Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00737 ATGTGGAGAGAGAGCGCATTTGTCCTGGTAGTGCTACTTCAAGTCCACCATATTTGTGCTACCAAGGACGACCAAGAACAACACCTTTGTCCCCCTTCTTCCTGTGGCAAAATCAGCAACATCACTTATCCATTTCGATTAAAAGGCGACCCAGAGAAGTGTGGGGACGAAAGGTATGAGGTTGGTTGTGAGAATAATGTTACGGTGTTGTATCTGCACTCTGCAAAATACCATGTTCAGGCAATCAACTACAACAAGTACACAGTGAGAGTGGTTGATCCTGCACTTCAACTCCATAAATGCTCCTCTCTTCCTCTCCGCTCCCTCTCTCGCTCCAATTTCTCTCATACTTACACTTACACTTACACTTACACTTACTCTTCGGATCCATACCAAGCCGGTCTAGGAGAATATGAAAATTGGGAATCTCTGATTTTCGAGCATATAGTGTTTCTGAGTTGTAACCATTCGGTGAGAGAGAATGGGAAGTATGTGAAAACAGAAGAATGCGTGAAGTGGGACTCAAAGGGCTATGCATATGCTGTTGGTGGTGACCTGAAAGCAGAGGACATTGAAGTTGGGTGTGACATAAAGCTTGTTGCTCCAACATCTTTCACCACTTTCAATAACAATTCCTACACTTCCATGCACCGGAGCTTGGCCTATGGATTTGAGATTTCTTGGGTACAACTCGCCTGTGATGATTATTGTCCATATATATTCTGCTATTTCGACTCTTCTAAACAGAAGCTTCATTGCAGCTCTGGGTTACCAGGGTTATTGCGGACAATACTGCTAGAGCTAGCTGGTATCAGTATTTATACTTCTCTCGCATGGGCTTACAAAATTTTGTTCGGATTGCCATTCTTAATTGTGATTTTTATATGTAAATGGAGGAAAAGACATTCATCAACATATGCAAATATTGAAAACTACCTTGAACAAAATCATTTGGCACCTATTAGATATTCATACAAGGAAATTAAGAAGATGACCGGAGGTTTTAAAGAGAAGTTAGGTGAAGGAGGATTTGGCTTTGTCTTTAAGGCAAAGTTGCGGAGCGGACCTTTTGTGGCAATAAAAATGTTAGGTAAATCTAAAGGAAATGGACAAGATTTTATAAACGAAGTTGCAACCATTGGAAGGATACATCATCAAAATGTGGTACAATTAATTGGATTTTGTGCTAGTGGCTCAAAGCGTGCTCTTGTTTATGAATTCATGTCCAATGGATCTCTTGATAAACTTATATTTTCAAGGGCTGGAAGTATAGATTTAAGCTATAAGAAAATATATAATATATCAATTGGAGTGGCTCGTGGGATTTCTTATCTCCATCATGGGTGTGAGATGCAGATTTTGCATTTCGATATCAAACCCCATAACATCTTACTCGATGAAAACTTTATCCCAAAGGTTTCTGACTTTGGATTAGCAAAGCTATATCCAATAGATAATAGCATTGTCACAATGACGACAACAAGAGGAACTATTGGATATATGGCTCCAGAATTGTTCTACAATAATGTTGGAGGAATATCTCATAAAGTTGATGTTTATAGCTTCGGAATGTTGTTGATGGAGATGGCAAGCAAAAGGAAGAATCTAAATCCCCATGTAGAACACTCAAGTCAACTTTACTTTCCGCTTTGGATCTATAATCATATTAGAGAAGAGGAAGATATAGATATAAAAGAGTTGACTAAAGCGGAAAAGATAATAGCAAAAAAACTTATCATAGTTGCTCTTTGGTGTATACAATTGAAGCCAAACGATCGTCCTTCAATGAACAAAGTAGTGGAAATGCTTGAGGGAGGCATTGAGGACTTGGAAATTCCTCCAAAACCTACTTTATTTCCTGATGAAATGAGTTTAGAGGATCAAACAACTAGCTCTATCTAA 1902 0.3875 MWRESAFVLVVLLQVHHICATKDDQEQHLCPPSSCGKISNITYPFRLKGDPEKCGDERYEVGCENNVTVLYLHSAKYHVQAINYNKYTVRVVDPALQLHKCSSLPLRSLSRSNFSHTYTYTYTYTYSSDPYQAGLGEYENWESLIFEHIVFLSCNHSVRENGKYVKTEECVKWDSKGYAYAVGGDLKAEDIEVGCDIKLVAPTSFTTFNNNSYTSMHRSLAYGFEISWVQLACDDYCPYIFCYFDSSKQKLHCSSGLPGLLRTILLELAGISIYTSLAWAYKILFGLPFLIVIFICKWRKRHSSTYANIENYLEQNHLAPIRYSYKEIKKMTGGFKEKLGEGGFGFVFKAKLRSGPFVAIKMLGKSKGNGQDFINEVATIGRIHHQNVVQLIGFCASGSKRALVYEFMSNGSLDKLIFSRAGSIDLSYKKIYNISIGVARGISYLHHGCEMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDNSIVTMTTTRGTIGYMAPELFYNNVGGISHKVDVYSFGMLLMEMASKRKNLNPHVEHSSQLYFPLWIYNHIREEEDIDIKELTKAEKIIAKKLIIVALWCIQLKPNDRPSMNKVVEMLEGGIEDLEIPPKPTLFPDEMSLEDQTTSSI 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00737 633 SMART serkin_6 333 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00737 633 PANTHER RUST RESISTANCE KINASE LR10-RELATED 303 624 IPR045874 GO:0004672
Viun8g00737 633 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Viun8g00737 633 Gene3D Transferase(Phosphotransferase) domain 1 408 611 - -
Viun8g00737 633 Pfam Wall-associated receptor kinase galacturonan-binding 30 93 IPR025287 GO:0030247
Viun8g00737 633 Gene3D Phosphorylase Kinase; domain 1 307 407 - -
Viun8g00737 633 FunFam PR5-like receptor kinase 408 615 - -
Viun8g00737 633 FunFam serine/threonine-protein kinase PBS1-like 301 407 - -
Viun8g00737 633 Pfam Protein kinase domain 336 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00737 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Viun8g00737 633 ProSiteProfiles Protein kinase domain profile. 333 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00737 633 SUPERFAMILY Protein kinase-like (PK-like) 317 603 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00737 Viun-Chr8 6215856 6221278 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00737 6 618 Receptor kinase-like Gene Family AT5G38260 35.795 1.08e-113 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g00737 Pkinase 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00737 - - vun:114195573 936.791