Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00733 ATGAGAAAGAGTTTGGACATGATGTGGCCAGAGGTAGCAGTGTTGCTCTTACTTCTAGTCCAGACAAGTCACGCTGGTTGTCTTCCTTCTTCGTGTGGCAAAATCAGCAACATCACTTATCCATTTCGATTAAAAGGCGACCCAGAGAAGTGTGGGGACGAAAGGTATGAGGTTGGTTGTGAGAATAATGTTACGGTGTTGTATCTGCACTCTGCAAAATACCATGTTCAGGCAATCAACTACAACAACTACACAGTGAGAGTGGTTGATCCTGCACTTCAACTCCATAAATGCTCCTCTCTTCCTCTCCGCTCCCTCTCTCGCTCCAATTTCTCTCATACTTACACTTACACTTACACTTACACTTACTCTTCGGATCCATACCAAGCCGGTCTAAGTTCATATGGAAATTGGGAATCTCTGATTTTCGAGCACATAGTGTTTGTGAATTGTAAGCATACAGTGAGAGAGAATGGGAAGTATGTGAAAACAGAAGAGTGCGTGAAGTGGGACTCAAAGGGCTATGCATATGCTGTTGTTGGTGACCTAAAAGCAGAGGACTTGGAAGTTGGGTGTGACATAAAGCTTGTTGTTCCAACATCTCTGAGGAGTTTGAATAACCATTCCTACACTTCCATGCACTGGAGCTTGGCCTATGGATTTGAGATTTCTTGGATAAACCTCGCCTGCCAGACACATAACTTTTGTCCAGATGGATTCTGCTATTTCGACTCTGCGAGCCAGAAACTGGACTGCCGACGCGGACCATTTCCACATTCACTTTACGGTAGCATACTTGAGGTGCTGAAATTCTATGTATCTCACCCGGACGAGTTTGTAAGAGATATTCTCTTACTTGTTTCTCAGGTATGGGCATGCAAAGTTTTGTTTGGAATGCCATTCTTAATTGGGATTTTGATATATAAATGGAAGAAAAGACATGCATCAACGTATGGAAATATTGAAAATTACCTTGAACAAAATAACTTGGCACCTATTAGATACTCATATAAGGAAATCAAGAAGATGGCAAGTGGTTTCAAAGAAAAGTTAGGTCAGGGAGGATTTGGCTCTGTCTTTAAGGGAAAGTTGTGTAGTGGACCTTTTGTGGCAATCAAAATGTTAGACAAATCAAAAGGAAATGGGCAAGATTTTATTAGTGAAGTTGCAACTATTGGAAGAATATGTCATCAAAATGTGGTACGATTAATTGGATTTTGTGTTCGTGGTTCAAAACGTGCTCTTGTATATGAATTCATGCACAATGGATCTCTTGATAAACTTATTTTTTCAAAAGATGGAAGTGCACCTTTAAGTTATGAAAAAATGTATAATATATCAATTGGAGTGGCTCGTGGGATTGCTTATCTCCACCATGGGTGTGAGATGCAAATTTTGCATTTTGACATCAAACCCCATAACATCTTACTAGATGAAAACTTCATCCCAAAGGTGTCGGACTTTGGATTGGCAAAGTTATATCCAATAGATAATAGCATCGTCACAATGACTGTGGCAAGAGGAACCATTGGATATATGGCTCCAGAATTGTTTTACAATAATATTGGAGGAATATCCCATAAGGCTGATGTTTATAGCTTTGGAATGCTTTTGATGGAAATGACTAGTAAGAGGAAGAATCTAAATCCCCATGCAGACCGCTCAAGTCAACTTTACTTTCCCCTTTGGATCTATGATCACATTAGGGAAGAGGAAGATATAGATATTGAAGATGTGACAGAAGAGGAAAAGAAAATAGCAAAGAAGATGATCATAGTAGCTCTATGGTGTATACAATTGAAACCAAAGGATCGTCCATCAATGAATAAAGTAGTGGAAATGCTTGAAGGAGACATTAAAGACTTGGAAATACCTCCAAAGCCTGCTTTATTTCCAGATGAAATGATTGTAGAGGACCACACAGTCAACTCTATCCAAACAATTTCAAGTGAATTCATTTAA 1962 0.394 MRKSLDMMWPEVAVLLLLLVQTSHAGCLPSSCGKISNITYPFRLKGDPEKCGDERYEVGCENNVTVLYLHSAKYHVQAINYNNYTVRVVDPALQLHKCSSLPLRSLSRSNFSHTYTYTYTYTYSSDPYQAGLSSYGNWESLIFEHIVFVNCKHTVRENGKYVKTEECVKWDSKGYAYAVVGDLKAEDLEVGCDIKLVVPTSLRSLNNHSYTSMHWSLAYGFEISWINLACQTHNFCPDGFCYFDSASQKLDCRRGPFPHSLYGSILEVLKFYVSHPDEFVRDILLLVSQVWACKVLFGMPFLIGILIYKWKKRHASTYGNIENYLEQNNLAPIRYSYKEIKKMASGFKEKLGQGGFGSVFKGKLCSGPFVAIKMLDKSKGNGQDFISEVATIGRICHQNVVRLIGFCVRGSKRALVYEFMHNGSLDKLIFSKDGSAPLSYEKMYNISIGVARGIAYLHHGCEMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDNSIVTMTVARGTIGYMAPELFYNNIGGISHKADVYSFGMLLMEMTSKRKNLNPHADRSSQLYFPLWIYDHIREEEDIDIEDVTEEEKKIAKKMIIVALWCIQLKPKDRPSMNKVVEMLEGDIKDLEIPPKPALFPDEMIVEDHTVNSIQTISSEFI 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00733 653 FunFam serine/threonine-protein kinase PBS1-like 313 419 - -
Viun8g00733 653 Gene3D Phosphorylase Kinase; domain 1 320 419 - -
Viun8g00733 653 ProSiteProfiles Protein kinase domain profile. 345 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00733 653 Pfam Protein kinase domain 348 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00733 653 SUPERFAMILY Protein kinase-like (PK-like) 330 616 IPR011009 -
Viun8g00733 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Viun8g00733 653 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Viun8g00733 653 FunFam PR5-like receptor kinase 420 627 - -
Viun8g00733 653 Pfam Wall-associated receptor kinase galacturonan-binding 27 90 IPR025287 GO:0030247
Viun8g00733 653 SMART serkin_6 345 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00733 653 PANTHER RUST RESISTANCE KINASE LR10-RELATED 316 636 IPR045874 GO:0004672
Viun8g00733 653 Gene3D Transferase(Phosphotransferase) domain 1 420 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00733 Viun-Chr8 6069429 6082275 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00733 17 630 Receptor kinase-like Gene Family AT5G38260 36.019 6.94e-113 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g00733 Pkinase 4.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00733 - - vun:114195573 969.918