Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00730 ATGGAAAAATGTGGTCCTTTATATATTTTCAGTATTTGTTTTAATATACCAAAATCTAACTTTTTTTTTGCAGTTCGATTGGATGAGAAACAGTTGGACATGATGAGGAGCGAGAGAGCATTGTTCCTGCTACTACTGCTTCTTCTCCACCACCATATTTGTGCTACCAAGGACGACCAAGAACACCTTTGTCCCCCTTCTTCATGTGGCAAAATCAGCAACATCACTTATCCATTTCGATTAAAAGGCGACCCAGAAAACTGCGGGGACAAAAGGTATGAGATTGGTTGTGAGAATAATGTTACGGTGTTGTATCTGTACTCTGCAAAATATCATGTTGAGGCAATAAACTACAAGAACTACACAGTGAGAGTGGTTGATCCTGCACTTCAACTCCATAACTGCTCCTCCCTTCCTCTCCGTTCTCTCTCTCGCTCCAATTTCTCTGATACTTACGATGACTACACGGATTCATACCAAGCCGGTCTAAGAGCAAATGATAATCGGGAATCTCTGAGTTTCGAGCATATAGTGTTTCTGAATTGTAACCATTCGGTGAGAGAGAATGTAAAGTATGTGAAAACTGAAGAGTGCGTGAGGTGGGACTCAAAGGGCTGTGCATATGCTGTTGGTGGTGACCTGAAAGCAGAGGACATTGAAGTTGGGTGTGACATAAAACTTGTTGCGCCAACATCTTTCACCACTTTCAATAACCATTCCTACACTTCTATGCACTGGAGCTTGGCCTATGGATTTGAGATTTCATGGTTAAAACTCGCCTGCCATCATTTTTGTCCACATGGATTCTGCTCTTTCGACTATGCGAGCCAGAAATTTGATGATTGCGGAACGATTGTACATGTGTGGAATGAGGAAAGGGATTGGGAGTGGGTTTCATTTTTATTGGTGATTTTGATACGTAAATGGAGGAAAAGACATGCATCAACGTATGAAAATATTGAAAATTACCTTGAACAAAATAACTTAGCACCTATAAGATACTCATATAAGGAAATCAAGAAGATGGCAGGAGGTTTCAAAGAAAAGTTAGGTCAGGGAGGATTTGGCTCTGTCTTTAAGGCAAAGTTGTGCAGCGGACCTTATGTGGCAATCAAAATACTAGGCAAATCAAAAGGAAATGGACAAGATTTTATCAATGAAGTTGCAACTATTGGAAGAATATGTCATCAAAATGTGGTACGATTAATTGGATTTTGTGTTCGTGGTTCAAAACGTGCTCTTGTATATGAGTTCATGCCCAATGGATCTCTTGATAAATTTATTTTTCCAAAAGATGGAAGTGCACATTTAAGCTATGAAAAAATATATAGTATATCAATTGGAGTGGCTCGTGGAATTGCTTATCTCCACCACGGTTGTGAGATGCAAATTTTACATTTTGACATCAAACCCCATAACATCTTACTGGATGAAAACTTCGTCCCAAAGGTTTCGGACTTTGGATTGGCAAAGCTATATCCAATAGATAATAGCATCATCACAATGACTGCAGCAAGAGGAACCATTGGTTATATGGCTCCAGAACTATTTTATAATAATATTGGAGGAATATCTCATAAGGCTGATGTTTATAGCTTTGGAATGCTTTTAATGGAGATGGCTAACAAGAGGAAGAATCTAAATCCCTATGCAAACCACTCAAGTCAACTTTACTTTCCCCTTTGGATCTACAATCATATTAGGGAAGAGGAAGATGTATATATTGAAGATATGACAGAAGAGGAAAAGAGAATAACAAAGAAGATGATCATAACGGCTTTATGGTGTATACAATTGAAACCAAAGGATCGTCCCTCAATGAATAAAGTACTAAAAATGCTTGAAGGAGACATTAAAGACTTAGAAATACCTCCAAAGCCTGCTTTATTTCCAGATGAAATGATTGTAGAGGATCGAACAATCAACTCTATCCAAACAATTTCAAGTGAATTCATTTAG 1959 0.3828 MEKCGPLYIFSICFNIPKSNFFFAVRLDEKQLDMMRSERALFLLLLLLLHHHICATKDDQEHLCPPSSCGKISNITYPFRLKGDPENCGDKRYEIGCENNVTVLYLYSAKYHVEAINYKNYTVRVVDPALQLHNCSSLPLRSLSRSNFSDTYDDYTDSYQAGLRANDNRESLSFEHIVFLNCNHSVRENVKYVKTEECVRWDSKGCAYAVGGDLKAEDIEVGCDIKLVAPTSFTTFNNHSYTSMHWSLAYGFEISWLKLACHHFCPHGFCSFDYASQKFDDCGTIVHVWNEERDWEWVSFLLVILIRKWRKRHASTYENIENYLEQNNLAPIRYSYKEIKKMAGGFKEKLGQGGFGSVFKAKLCSGPYVAIKILGKSKGNGQDFINEVATIGRICHQNVVRLIGFCVRGSKRALVYEFMPNGSLDKFIFPKDGSAHLSYEKIYSISIGVARGIAYLHHGCEMQILHFDIKPHNILLDENFVPKVSDFGLAKLYPIDNSIITMTAARGTIGYMAPELFYNNIGGISHKADVYSFGMLLMEMANKRKNLNPYANHSSQLYFPLWIYNHIREEEDVYIEDMTEEEKRITKKMIITALWCIQLKPKDRPSMNKVLKMLEGDIKDLEIPPKPALFPDEMIVEDRTINSIQTISSEFI 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00730 652 Gene3D Phosphorylase Kinase; domain 1 306 418 - -
Viun8g00730 652 SUPERFAMILY Protein kinase-like (PK-like) 329 615 IPR011009 -
Viun8g00730 652 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Viun8g00730 652 SMART serkin_6 344 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00730 652 FunFam PR5-like receptor kinase 419 626 - -
Viun8g00730 652 Pfam Wall-associated receptor kinase galacturonan-binding 64 127 IPR025287 GO:0030247
Viun8g00730 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Viun8g00730 652 FunFam serine/threonine-protein kinase PBS1-like 312 418 - -
Viun8g00730 652 PANTHER RUST RESISTANCE KINASE LR10-RELATED 316 635 IPR045874 GO:0004672
Viun8g00730 652 Gene3D Transferase(Phosphotransferase) domain 1 419 622 - -
Viun8g00730 652 ProSiteProfiles Protein kinase domain profile. 344 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00730 652 Pfam Protein kinase domain 347 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00730 Viun-Chr8 5929070 5948942 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00730 45 629 Receptor kinase-like Gene Family AT5G38260 36.033 7.65e-117 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun8g00730 Pkinase 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00730 - - vun:114195573 1334.32