Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00722 ATGGAACTGCATTCTCTGCCTAGCCTGCAGAAATCATTTAACAAGTCTTCCTTTGTTCAGCCTTGTAACAAACGAATACAGTCTGCATTTGAATCCAAAATTGTTTCCTGTAAGAATCGTCTAAGAAAGCATCTCGGTCATAAAGTTGCCTATGAGTCTCAATCAGATTCTGATGCTGAGTTTCACTCATTGCCTGGAGTTTCTGGAACAAAGAGATTGAGAAAGAATCTCACTTCTCGTTTTGAGCAGTTTCATATGAAAGAACCATCCTATGAGGAACCTGAAAATGGTAAGTTGAGGCCATTCTTATGCAGGAAGGAAAATGATCATGGAATCACAAGGCCAGTAGTCTGTGGAAAACATGGTGAAATTTGTAAAGAACATTTGGCTAAAGAGGTGCAAAAGCCTGCAAAAATTGTCTCCCTCAAGAAGGTCCTTAAGTCTTCCAAAAGGTGTATGAGCCACACAAATGGAAAACCTAGACTAACTTTAAAAAAGCAATGGAAGAGATTGAGCATTGGAACAGATAGTGGGTACTGCTGTGGGAACCATGGTTTAAAAATTAAGGAAAGCATTGAAACACAAAATACAATAATTTATGATGAAGCAAATGTTGATATGTCCCTGGAAGACTTGGAGAGAGGTGGCAAGCAAGATGCTAAAGATAAAGCTAAGCAGGTTGTTAGGGTTGGAAATAGAGAAAATGTTCCATTGAAGGTGAAGAACAAGGACATTCGGAAACACCGTAGCATTAATGAGCTCTCTGCTAAAGAAACCAAAGTGACGGATATGATGAATTGTGCTCAAGACAGAGAGACTGGTTTGTGTAGCCAAAAAAGAAGAAACTCTATTCAAGGTCACCTAAACATATCTACTATAAACTCAGATACGTTCTGCTGTGTGTGTCGAAGCTCAAGCAATGATAAAATCAACTGTTTGTTGGAATGTTGTCAATGCCTAATTAGAGTGCACCGAGCTTGCTATGGTGTTTCCACATTACCCAAAAGAAGTCGCTGGTGTTGCAGACCATGCCGAACGAACTCAAAAAATATTGCTTGTGTCCTATGTGGTTATGGTGGTGGAGCCATGACTCGAGCAACAATGAGTCATGCGATTGTCAAGAGCCTCCTAAAAGTGTGGAATGGTGAGAAAGATGGCATGCCTAAGCATACAACTTCATGTGAATTTTTTGGAAAGGAAATGTATGCATTCCCATCCTCAAGGGCTGATCATGAAAGTGTTTTGAAGACAAAAATCGGTGATACATCAACAGATCTGGTGAAAGTTCAAATATCTACAAATCATATGCAGCATACCCCCACTAGTCTTTCTAAATTCAAGGTACACAACAGCATTACTGCAGGAGTTCTTGATCCAACTGTTAAACAATGGATTCATATGGTTTGTGGTCTTTGGACTCCTGGAACAAGATGCCCGAATGTTGACACCATGAGTGCTTTTGATGTATCTGGTGTTTCGCGTCCCAGGGCAATTGTGGTTTGTTCCATTTGCAATCGATCGGGTGGTTCTTGTATAGAGTGCAGGGTGGCTGATTGCTCTGTCAAGTTTCATCCTTGGTGTTCTCATCAAAAGAACCTGTTGCAAAGTGAGACTGAAGGTATTGATGATGAAAAGATTGGATTTTATGGAAGATGCATGCTTCATGCTATTGAACCTAGATATTTGTCCATGTATGATCCTATTTATGAAATGGGAAGTCAAGAAGAAAAGGAATTCACCTGTGCCAGGGTAGAGGGTTACAAGGGAAGAAGATGGGATGGTTTTCAGAATAATCACTGCCAAGGTGGATGCCTTGTTCCTGAGGAGCAGCTTAATGCTTGGATTCACATCAATGGGCAGAAATTATGTTCTCAAGGACTCACAAAATTCCCAGATTTGGATATGGAGCATGATTGTCGAAAGGGCTACGCTCGGTACAAACAAGCAAAGGGATGGAAACACCTTGTTGTATACAAGTCCCGTATACACGCACTTGGTCTTTACACTTCTCGATTCATTTCCCGGGGTGAAGTGGTAGTTGAATATATTGGTGAAATTGTGGGATTGCGTGTGGCTGATAAAAGGGAGAAGGATTATCAATCTGGAAAGAAACTTCAGTACAAGAGTGCCTGCTACTTCTTCAGGATAGACAAAGAGCATATTATTGATGCCACAAGGAAAGGGGGGATTGCTCGTTTTGTTAACCACTCGTGCCTGCCAAATTGCGTGGCAAAAGTGATTACTATAAGGCATGAAAAGAAGGTTGTCTTCTTTGCTGAGAGGGATATATTTCCTGGTGAAGAGATCACGTATGATTACCATTTTAACCATGAGGACGAAGGAAAGATTCAATGTTACTGCAATTCAAAAAATTGCAGGCGATATATGAACTGA 2394 0.4069 MELHSLPSLQKSFNKSSFVQPCNKRIQSAFESKIVSCKNRLRKHLGHKVAYESQSDSDAEFHSLPGVSGTKRLRKNLTSRFEQFHMKEPSYEEPENGKLRPFLCRKENDHGITRPVVCGKHGEICKEHLAKEVQKPAKIVSLKKVLKSSKRCMSHTNGKPRLTLKKQWKRLSIGTDSGYCCGNHGLKIKESIETQNTIIYDEANVDMSLEDLERGGKQDAKDKAKQVVRVGNRENVPLKVKNKDIRKHRSINELSAKETKVTDMMNCAQDRETGLCSQKRRNSIQGHLNISTINSDTFCCVCRSSSNDKINCLLECCQCLIRVHRACYGVSTLPKRSRWCCRPCRTNSKNIACVLCGYGGGAMTRATMSHAIVKSLLKVWNGEKDGMPKHTTSCEFFGKEMYAFPSSRADHESVLKTKIGDTSTDLVKVQISTNHMQHTPTSLSKFKVHNSITAGVLDPTVKQWIHMVCGLWTPGTRCPNVDTMSAFDVSGVSRPRAIVVCSICNRSGGSCIECRVADCSVKFHPWCSHQKNLLQSETEGIDDEKIGFYGRCMLHAIEPRYLSMYDPIYEMGSQEEKEFTCARVEGYKGRRWDGFQNNHCQGGCLVPEEQLNAWIHINGQKLCSQGLTKFPDLDMEHDCRKGYARYKQAKGWKHLVVYKSRIHALGLYTSRFISRGEVVVEYIGEIVGLRVADKREKDYQSGKKLQYKSACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVITIRHEKKVVFFAERDIFPGEEITYDYHFNHEDEGKIQCYCNSKNCRRYMN 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00722 797 ProSiteProfiles Extended PHD (ePHD) domain profile. 440 556 IPR034732 -
Viun8g00722 797 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 438 556 IPR013083 -
Viun8g00722 797 Pfam PHD-zinc-finger like domain 461 536 - -
Viun8g00722 797 CDD ePHD 463 546 - -
Viun8g00722 797 ProSiteProfiles Zinc finger PHD-type profile. 296 347 IPR019787 -
Viun8g00722 797 SMART PostSET_3 781 797 IPR003616 -
Viun8g00722 797 SUPERFAMILY FYVE/PHD zinc finger 293 350 IPR011011 -
Viun8g00722 797 ProSiteProfiles Post-SET domain profile. 781 797 IPR003616 -
Viun8g00722 797 Pfam PHD-finger 311 345 - -
Viun8g00722 797 SMART set_7 653 780 IPR001214 GO:0005515
Viun8g00722 797 Gene3D SET domain 561 797 IPR046341 -
Viun8g00722 797 CDD SET_SETD1-like 655 793 - -
Viun8g00722 797 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 108 797 - -
Viun8g00722 797 SMART PHD_3 298 345 IPR001965 -
Viun8g00722 797 SMART PHD_3 500 556 IPR001965 -
Viun8g00722 797 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 360 IPR013083 -
Viun8g00722 797 ProSiteProfiles SET domain profile. 653 774 IPR001214 GO:0005515
Viun8g00722 797 SUPERFAMILY SET domain 617 793 IPR046341 -
Viun8g00722 797 Pfam SET domain 666 773 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00722 Viun-Chr8 5889718 5897220 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00722 655 797 C2H2 Transcription Factor Family AT2G23740 32.515 4.05e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Viun8g00722 SET 1.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00722 - - vun:114194743 1652.11