Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00712 ATGTTGTTTTTTCGGAAGTTTAAAAGAAGAGGAATTGTGATGGGGGCTGAACAGCGGCAAATGGATTCGCACAAGAAAATGGTAATTGCCATTGCCATAGCCAGCACTTCACTTGGTGCAGTCATTTTGAGTGTGTTGTGCATCTGGATTTATCATACCAAGTACCCTTCAAAATCCAAAGGGAAAAACGTTCAAAGATCAGATGCTGAGAAAGGGCTAACTTCAGCACCAACTCTGAGTAAATTCAGTTCTATAAAGCTGGTTGGTAAGAAAGGGTGTGTTCCAATAATTGATTATAAGCAAATAGAAAAAGCCACCGGCAATTACAAGGAAAGTAACATCTTAGGTGAGGGAGGTTTTGGATGTGTTTACAAAGCACGTTTGGAGGATAATTTAGAAGTTGCCGTTAAGAAATTGCACTGTGAAAATCCGTGTGCTGAGCAAGAATTTGAGAACGAGGTGGAATTGTTAAGTAAAATTCAACATCCAAATGTAATCTCTCTTCTGGGATGTAGCAGTAATGAAGATACAAGGATTATTGTCTATGAATTGATGCACAATGGATCATTGGAAACACAATTACATGGACCTTCTCATGGCTCAGCATTGACTTGGCATTTGAGGATGAAGATTGCTCTTGACACAGCAAGGGGATTAAAATATCTGCATGAACACTGTTACCCTGCTGTGATCCATAGAGATCTGAAATCTTCTAATATTCTTTTAGATATAAAGTTCAATGCCAAGCTTTCAGATTTTGGCCTTGCCATAACCAATGGGACCCAAAACAAGAATAATATCAAGCTTTCAGGCACGTTGGGTTACGTAGCCCCGGAGTATCTTTTAGATGGTAAATTGACTGATAAAAGTGATGTATATGCTTTTGGAGTTGTGCTGCTGGAGCTTCTCTTGGGAAAGAAGCCTGTGGAAAAACTAGCACCAGCTCAATGCCAATCTATTGTCACATGGGCCATGCCACAGCTCACAGACAGATCTAAGCTTCCAAACATCGTGGATCCTGTAATTAAGGATACAATGGACCCCAAACACTTGTACCAGGTTGCTGCAGTGGCCGTGCTGTGCGTGCAACCAGAGCCAAGTTACCGACCCTTAATTGCAGATGTTCTCCACTCACTCATTCCTCTTGTCCCTGTAGAGCTTGGTGGAACACTTAAAGTAGCACAGCTGCCACAGCAAGTATTACCTGGTAACCCACATGAGGATTCTAGTCCATGA 1236 0.4167 MLFFRKFKRRGIVMGAEQRQMDSHKKMVIAIAIASTSLGAVILSVLCIWIYHTKYPSKSKGKNVQRSDAEKGLTSAPTLSKFSSIKLVGKKGCVPIIDYKQIEKATGNYKESNILGEGGFGCVYKARLEDNLEVAVKKLHCENPCAEQEFENEVELLSKIQHPNVISLLGCSSNEDTRIIVYELMHNGSLETQLHGPSHGSALTWHLRMKIALDTARGLKYLHEHCYPAVIHRDLKSSNILLDIKFNAKLSDFGLAITNGTQNKNNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGKKPVEKLAPAQCQSIVTWAMPQLTDRSKLPNIVDPVIKDTMDPKHLYQVAAVAVLCVQPEPSYRPLIADVLHSLIPLVPVELGGTLKVAQLPQQVLPGNPHEDSSP 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00712 411 PANTHER OS01G0750732 PROTEIN 18 382 - -
Viun8g00712 411 CDD STKc_IRAK 115 382 - -
Viun8g00712 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Viun8g00712 411 ProSiteProfiles Protein kinase domain profile. 109 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00712 411 Pfam Protein kinase domain 109 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00712 411 FunFam probable receptor-like protein kinase At1g80640 185 384 - -
Viun8g00712 411 Gene3D Phosphorylase Kinase; domain 1 71 184 - -
Viun8g00712 411 FunFam Protein kinase superfamily protein 76 184 - -
Viun8g00712 411 Gene3D Transferase(Phosphotransferase) domain 1 185 384 - -
Viun8g00712 411 SUPERFAMILY Protein kinase-like (PK-like) 91 379 IPR011009 -
Viun8g00712 411 SMART serkin_6 109 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00712 411 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00712 Viun-Chr8 5833957 5838752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00712 20 325 Receptor kinase-like Gene Family AT1G80640 51.133 2.48e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Viun8g00712 Pkinase 4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00712 - - vra:106764755 779.245