Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00710 ATGGCCAGACCACAACAGCGTTACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATATTGAAGACAAGGATATGGCTTGGTACATTTGAAACAGCTGAGGATGCTGCTAGAGCCTATGATGAAGCAGCTAGGTTAATGTGTGGTGCGAGGGCAAGGACAAACTTCCCTTTCAACCCCAATGTGTCTCACACATCATCTTCTAGTTCAAAGCTTCTCTCAGCAACTTTGACTGCAAAACTTCACAGGTGCTACATGGCTTCTCTGCAAATGACAAGACAGGCTTTGGCATCTTCTGAGTCTCAGAGAACAGCTTCAGTGCCAAATGCCACTTCCACATCCCAACCAAAGAGTCTCAGTGTGAAGAGTGACCAAACTCATCAAGTGTTGCCACACAAGAGAGCAGAGGAGGATCAAGAATCAGAGGCAATGGCCAGAACTGTTGAAAGTGTTCCTCTGCAGTTCAAGCCTCTTGAGGAAGATCACATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGCTCTGTTGAGCTCTCCTCTGTCTTTTCACCCTAA 576 0.474 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNVSHTSSSSSKLLSATLTAKLHRCYMASLQMTRQALASSESQRTASVPNATSTSQPKSLSVKSDQTHQVLPHKRAEEDQESEAMARTVESVPLQFKPLEEDHIEQMIEELLDYGSVELSSVFSP 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00710 191 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Viun8g00710 191 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Viun8g00710 191 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Viun8g00710 191 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Viun8g00710 191 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 140 - -
Viun8g00710 191 MobiDBLite consensus disorder prediction 104 133 - -
Viun8g00710 191 MobiDBLite consensus disorder prediction 104 154 - -
Viun8g00710 191 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Viun8g00710 191 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Viun8g00710 191 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Viun8g00710 191 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Viun8g00710 191 MobiDBLite consensus disorder prediction 134 151 - -
Viun8g00710 191 FunFam Ethylene-responsive transcription factor 2 6 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00710 Viun-Chr8 5801401 5802557 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00710 1 189 AP2-EREBP Transcription Factor Family AT5G25190 63.351 1.00e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun8g00710 AP2 6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00710 - - gmx:100785918 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00710 8 5801401 5802557 Viun9g03134 9 38771527 38772613 PCT