Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00709 ATGTGTTCATGTAACTGGAAGACAAGGATATGGCTTGGTACATTTGAAACAGCTGAGGATGCTGCTAGAGCCTATGATGAAGCAGCTAGGTTAATGTGTGGTGCGAGGGCAAGGACAAACTTCCCTTTCAACCCCAATGTGTCTCACACATCATCTTCTAGTTCAAAGCTTCTCTCAGCAACTTTGACTGCAAAACTTCACAGGTGCTACATGGCTTCTCTGCAAATGACAAGACAGGCTTTGGCATCTTCTGAGTCTCAGAGAACAGCTTCAGTGCCAAATGCCACTTCCACATCCCAACCAAAGAGTCTCAGTGTGAAGAGTGACCAAACTCATCAAGTGTTGCCACACAAGAGAGCAGAGGAGGATCAAGAATCAGAGGCAATGGCCAGAACTGTTGAAAGTGTTCCTCTGCAGTTCAAGCCTCTTGAGGAAGATCACATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGCTCTGTTGAGCTCTCCTCTGTCTTTTCACCCTAA 510 0.4569 MCSCNWKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNVSHTSSSSSKLLSATLTAKLHRCYMASLQMTRQALASSESQRTASVPNATSTSQPKSLSVKSDQTHQVLPHKRAEEDQESEAMARTVESVPLQFKPLEEDHIEQMIEELLDYGSVELSSVFSP 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00709 169 MobiDBLite consensus disorder prediction 82 111 - -
Viun8g00709 169 Gene3D AP2/ERF domain 3 43 IPR036955 GO:0003700|GO:0006355
Viun8g00709 169 CDD AP2 7 42 IPR001471 GO:0003700|GO:0006355
Viun8g00709 169 SUPERFAMILY DNA-binding domain 6 43 IPR016177 GO:0003677
Viun8g00709 169 ProSiteProfiles AP2/ERF domain profile. 1 42 IPR001471 GO:0003700|GO:0006355
Viun8g00709 169 MobiDBLite consensus disorder prediction 112 128 - -
Viun8g00709 169 Pfam AP2 domain 7 34 IPR001471 GO:0003700|GO:0006355
Viun8g00709 169 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 7 118 - -
Viun8g00709 169 SMART rav1_2 2 48 IPR001471 GO:0003700|GO:0006355
Viun8g00709 169 MobiDBLite consensus disorder prediction 82 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00709 Viun-Chr8 5800828 5802381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00709 7 167 AP2-EREBP Transcription Factor Family AT5G25190 57.669 7.48e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun8g00709 AP2 1.6e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00709 - - gmx:100785918 236.498