Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00702 ATGGAAGGAAGAAGCAAGAAAGAGGCACACTTTTGTGACAGACCAAGCTTCTTCTCCTCTTGTGGTGCAGAGGCACCTCCTAGTCCAAGCACTCCACTGCAGCATCCACAAGAGAAGAAACAGGTATCTGTTGAGGAAGAAGAGGAAGAAAACAAGGAGTCAAAGCATGGTACTATATTGGATCTAAATGTTTCAGGTGATGATTCTTGCAGTGCAGAAGGACTAGAACTGAACCTCATAACCTGTTTGGATGTGGGGTCATCATCCATTGATGCCAATTCCTCTGCAGAAGCCCCTCTTGCTTCTGATGCTGCCGAGCCAAGAGTCTTCTCCTGCAACTACTGCCACAGAAAGTTTTACAGTTCACAAGCACTTGGTGGGCACCAAAATGCACACAAGAGAGAGAGGTCAATAGCAAAGAGAGGGCACAGGTTTGGATCACAGATAATGGCCTTTGGCCTTCCCTTACTGCATAATAACAACCACTATGCAAGCATGGCCTCCCTACCCCTTTATGGTGCTTCCAACACTAGAGGAGGACCTCTTGGAATTCAAGCACACTCCATGATCCAAAAGCCCTCTCATCATCATCACCATCATCATGTGAGTGGATTTGGAAACTCTTACTCACACCACCATGGTTGGTCCAGACCCATCATTGACCAACAACCTGGAATAGCAAAACTACCGGTGCCTGATTTTCACAGAACAAAATCAGCATTTTCAGCATCACAGACAAGTGTTGGTAGGTTTGAAATGGCTAACACCCTCATCAATTCTTCAGCCAATAAGGAAATCGGTGGATGTGTGGCCAGTGCTGAAACTCGTTTCAAGAGTAATAATCAAGAAGAAATGAAGCACCTTGATTTATCCCTCAAGCTCTAA 885 0.4542 MEGRSKKEAHFCDRPSFFSSCGAEAPPSPSTPLQHPQEKKQVSVEEEEEENKESKHGTILDLNVSGDDSCSAEGLELNLITCLDVGSSSIDANSSAEAPLASDAAEPRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGHRFGSQIMAFGLPLLHNNNHYASMASLPLYGASNTRGGPLGIQAHSMIQKPSHHHHHHHVSGFGNSYSHHHGWSRPIIDQQPGIAKLPVPDFHRTKSAFSASQTSVGRFEMANTLINSSANKEIGGCVASAETRFKSNNQEEMKHLDLSLKL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00702 294 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Viun8g00702 294 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 31 294 IPR044246 GO:0009788
Viun8g00702 294 Gene3D Classic Zinc Finger 100 150 - -
Viun8g00702 294 MobiDBLite consensus disorder prediction 20 60 - -
Viun8g00702 294 MobiDBLite consensus disorder prediction 39 57 - -
Viun8g00702 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Viun8g00702 294 SUPERFAMILY beta-beta-alpha zinc fingers 107 137 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00702 Viun-Chr8 5691182 5692709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00702 28 294 C2H2 Transcription Factor Family AT5G10970 36.861 9.36e-42 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00702 - - gmx:100820461 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00702 8 5691182 5692709 Viun9g03137 9 38803305 38804550 PCT