Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00700 ATGACTGTGGTAGAGGATCATAGAATGGATGATCTCAGAGATGAGTTTCCCTTAGGATTGCGTGTTCTTGCTGTTGATGATGACTCAACATGTCTCAGGATTCTGGAGACTATGCTACAAAAGTGCCAATACCACGTAACCGCCACTAAAAATGCACAAACGGCATTGAATCTGTTGAGAGGAAACAAGAACAGGTTTGACCTTGTTATCAGCGATGTACGAATGCCAGACATGGATGGATTTAAGTTGCTTGAGCTTGTCGGGCTTGAGATGGACCTACCTGTCATAATGATGTCTGTAGATGGTGACCCTAAGATGGTGATGAAGGGAATTACACATGGAGCTTGTGATTATCTTCTAAAACCTGTTAGACTTAAGGATGTACAGAATATTTGGCAGCATGTTGTGAGAAGGAGGACGATTGGTTCAAAGGAGCGGAACAGAAGCAGCAACCAAGACAAAGCTAATACTGATAGCAATGAAAGAGGTTCAGTAGCAACAGGAAATTCAGATCAAAATGTAAAGTCTTCCAGAAAGAGGAAAGATGAGGATGAGTATGATAATGAGGACCAAGAGAATGGCCATGACAATGATGACTCATCAAGTCATAAGAAAGCTCGTGTAGTTTGGACTGTGGAACTGCACCACAAGTTTGTCTCTGCTGTTAATCAATTAGGCTTTGAAAAAGCTGTGCCTAAAAAGATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCCAGCCACCTTCAGAAATATAGGCTTTATCTGAAAAGGATTAACTGTGCGGCGAACCGACAGGCTAATATGGTGGCAGCATTAGGCACTACAGATCCATCTTTTCTGAGAATGGGTTCTCTGAGTGGTGTTGGACATTTGCATTCATTGACTGGTGCTCAACAGTTTCATAACAATACTTTTAGACCCTTTGGACCTGGTGGAATAGCTGGTAGATTGAACACTTCTGTTGGTGTGAATGTGCATGAAACTCTTCAGTTGGGTCATGCACAAAATTTTCACAAATCTATGCATGACCAACTCAAGTTTCAACCTGCTATAACTGGTGGCAACCAGAATGGTATTCAGGGAGTGCCATTGTCCACTTCTCTTGATCAATTTCAACATAATAAGGGTGTTGGTATTGCTGTTAGTCCTATTCAAAGCATTTCCCCTTTTATTGATGTTCAACCAAATTTTTCAGTGCCAAATAAACTCCCAGATCTGATACCAAAATCAACAATTGGTTTGGACGTATCAAACAATGCTTTGGTGTTGAAAGCTGATAGTGATAACACACAAGGGGGTGGAGTGTTGTTTGGTCAAACTTCATTAGCCTCTCAGAATTCTCAATTCTCACTCCCTTTGCTGGATCAGGGTAGGTGCAGTGATATTTGGTCAAATACTGTTCGGTCTTCAGGGACAAATTCTTACGCTGCAGGTGAAACTTTTAGAGGGAGGAATCTGAGTGGTGCTTCATCCATTACTTCACACTCTAACCAAACCCATGATTCACTAAAAGATATGTATTCACAAGGAGTTCTTATTCCAAATAATTCTGGACAAATTAGCAATAGTGTGGTGCCATTTCAAGGGTGGGATGACAACAATGATGATAGTACTTTCCCTTCAAATATTTTTGGTAACTCAATCGACTCTCTCATTGATAACACTTCTTTCAACTCAATCTACAACAGAAACACAGACTTCGGTTTCTTTGATCCCTTACTCATGAAACCTGATGGAGTTACGGGATTGAGTGAAGAAAATACATTGAGACAACAACAGGGATACCTCATGAACCATACCAAGTCTCAAAACAATAGTGCCGCTAATAATCTTGGTTCCATGGAAGAATTTGTCAGTTCAATGATGAAACAGAAACAAGACAGTGTGAAATTATTGGAAGGATACTTATGCGACAACAATCTCTCAGACGGGACATCCATTTGA 1959 0.4053 MTVVEDHRMDDLRDEFPLGLRVLAVDDDSTCLRILETMLQKCQYHVTATKNAQTALNLLRGNKNRFDLVISDVRMPDMDGFKLLELVGLEMDLPVIMMSVDGDPKMVMKGITHGACDYLLKPVRLKDVQNIWQHVVRRRTIGSKERNRSSNQDKANTDSNERGSVATGNSDQNVKSSRKRKDEDEYDNEDQENGHDNDDSSSHKKARVVWTVELHHKFVSAVNQLGFEKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRINCAANRQANMVAALGTTDPSFLRMGSLSGVGHLHSLTGAQQFHNNTFRPFGPGGIAGRLNTSVGVNVHETLQLGHAQNFHKSMHDQLKFQPAITGGNQNGIQGVPLSTSLDQFQHNKGVGIAVSPIQSISPFIDVQPNFSVPNKLPDLIPKSTIGLDVSNNALVLKADSDNTQGGGVLFGQTSLASQNSQFSLPLLDQGRCSDIWSNTVRSSGTNSYAAGETFRGRNLSGASSITSHSNQTHDSLKDMYSQGVLIPNNSGQISNSVVPFQGWDDNNDDSTFPSNIFGNSIDSLIDNTSFNSIYNRNTDFGFFDPLLMKPDGVTGLSEENTLRQQQGYLMNHTKSQNNSAANNLGSMEEFVSSMMKQKQDSVKLLEGYLCDNNLSDGTSI 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00700 652 SMART REC_2 20 132 IPR001789 GO:0000160
Viun8g00700 652 Pfam Myb-like DNA-binding domain 207 257 IPR001005 -
Viun8g00700 652 PIRSF RR_ARR_type-B 1 647 IPR017053 GO:0003677|GO:0003700|GO:0009736
Viun8g00700 652 FunFam Two-component response regulator 201 264 - -
Viun8g00700 652 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 258 IPR006447 GO:0003677
Viun8g00700 652 MobiDBLite consensus disorder prediction 142 203 - -
Viun8g00700 652 CDD REC_typeB_ARR-like 22 136 - -
Viun8g00700 652 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 261 IPR017930 -
Viun8g00700 652 SUPERFAMILY CheY-like 19 144 IPR011006 -
Viun8g00700 652 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 384 IPR045279 GO:0009736
Viun8g00700 652 MobiDBLite consensus disorder prediction 153 173 - -
Viun8g00700 652 Pfam Response regulator receiver domain 22 129 IPR001789 GO:0000160
Viun8g00700 652 SUPERFAMILY Homeodomain-like 203 262 IPR009057 -
Viun8g00700 652 Gene3D - 20 158 - -
Viun8g00700 652 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
Viun8g00700 652 Gene3D - 201 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00700 Viun-Chr8 5653802 5657931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00700 14 641 Response Regulator Gene Family AT2G25180 41.331 6.51e-129 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Viun8g00700 Response_reg 3.9e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00700 - K14491 var:108336977 1095.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00700 8 5653802 5657931 Viun9g03138 9 38813454 38817971 PCT