Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00698 ATGAGTGGTTCGATTAGATTTCGTGAGAGATCGGGTTGTAGACCCTGCTACAACTTTCATGACTCAGATGATGACGATGTGAAATCTACAGAAAATTATAATGTGGGTGGAAGCTCCACTCAACAAAAACGAAAAAATAGCGACGATTCAGTTGTTCTCCCGAGGAAACGAGGGAGACCTAGAAAAAACATCGCGAGAAGTGATACAACTGAGAGTAATGTGACCCCTTTTGCTGAGCGGCTTCGTGACAGATCAAGTATAAAGAAGCCGAACTATAATATTGACGAGTCTGATGAAGATTTTGATACTTTCCCCAGTAAATATGGGAACCAGGAAAAAGTTCTTAAAATCGAAAGCAGTGACACAGTTAGCCCACTCAAAGATATTGACAAGATATTAGATTGTGAGATGCGTTCTGTGGTGGCTGCTGAAAGTGATGCTCAAAAGTTGGAGTCAAAACGTATTTTGGTCAAGCAATATCTTGTTAAGTGGAAGGGACTCTCATATTTGCACTGCACATGGGTTCCAGAAGAAGAGTTTTTGAAGGCTTTCAAGACTCAGCCAGGTCTAAAGATCAGAGTAAACAGCTTCCATCGTCGTATGGAATCAGCCAAGAGTTTTGATGAAGATTTTGTTGCCATTAGACCCGAATGGACTATGGTTGATCGAATACTTGCTTGCAGGTGGGGTAACGATGATAAGAAGGAGTATCTGGTGAAGTGGAAAGAGCTTCCCTATGATGAGTGCCACTGGGAGCTGGAATCAAATATCTCTGCATTTCAGAAAGAAATAGAAAGATTCTACACATTTCAGTGTAGAACAAGGACAGTTTTGTCCAATAAGAAAAGTAGTATTGCAGAAGCTTCTGAATCTAATAATCTGCAGAGAGAATTTGTACAGTACGAAGCCAGCCCTGAGTTTCTTTCAGGGGGTTCACTGTATCCGTATCAGCTTGAAGGATTGAACTTCTTACGATATTCATGGTCCAAGCAAACTCACGTTATACTTGCTGATGAAATGGGACTTGGCAAAACCATACAGAGCATTGCTTTCATGGCATCGCTGTTTGAGGATAATGTTTGTCCCCATTTGGTGATTGCTCCCCTTTCAACTTTACGAAATTGGGAGCGTGAATTTGCTACGTGGGCACCTGAAATGAATGTTGTTATGTATTCTGGATCTGCCGATGCTCGTGCTTTAATCAGAGAGTATGAGTTTTACTTTCCTAAAGGTCTTCGCTCAAAGAAAGGCAAAGAAATCGTGGATGAAAGAAAAAGAAGAAGAGTAAAGTTTGACGTTCTATTAACGTCATACGAGACAATAATTTCCGACTCATCCTCGTTAAAACCTATAAAGTGGGAGTGCATGATAGTTGATGAGGGCCACCGTCTGAAGAACAAAAATTCTAAATTATTTTCTCCATTGACGCAATTATCAAGCCAACACCGTGTGCTTTTGACTGGAACTCCTCTTCAGAACAATTTGGATGAGCTTTTTATGCTGATGCACTTCCTTGATGCTGAAAAGTTTGGAAGTTTAGAGGAGTTTCAGAAAGAATTTAAGGATATCAATAGAGAGGAGCAGATTCTGAGACTACAAAAAATGTTGGCACCACATCTCTTGAGAAGAATGAAGAAAGATGTGATGACAGAACTACCTCCGAAAAAGGAACTTATTTTACGAGTTGAATTATGCAGTGTACAGAAAGAATTCTACAAGGCAATTCTGAATCGTAATTATCCTATATTAACCCGCCGAGCTCGTCCACATATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGCTGCCATCCCTTTATGTTAAATGGACTTCAACCTGATCTTAATGATGAAAATCCATATGACCAATTGCTTGAATCCTCTGGGAAGTTGCAACTGTTAGACAAGATGATGGTGAAACTTAAAGAGCAAGGTCATAGAGTCCTTATATGTTCCCAATTTCAGAAAATGCTGGACTTGCTTGAAGATTACTGTTGTTACAAGAATTGGCATTATGAGAGGATAGATGGGAAGGTTGGAGGAGCTGAAAGACAAGAAAAGATAGATCGGTTTAATGCTGAAGATTCTTCAAGATTTTGTTTTCTTCTTTCTACAAGAGCTGGGGGATTAGGGATAAACCTTACTGCAGCAGACACAGTTATTATATATGACAGTGATTGGAATCCTCATGCTGACTTGCAAGCCATGGCCAGGTCTCACCGCCATGGACAGAAAAAGAAGGTGATGATTTATAGGTTCATAGCAAGAGGAACAATTGAAGAAAGGATGATTCAGCTGACAAAGAAGAAAAGGGTGTTAGAACACCTGGTTGTAGGGAGGCTACAGGATGAAAACATTAAGCAGAAAGAGTTAGATGATATCGTAAGGTATGGCTCAGAGGAGCTATTTGCTGATGAAAATGATGAAGCAAGCAGGTCTCGTCAAATTCATTATGATGATGATGCTATAGACAGATTGCTGGATCGTGATGGAGTTGGAGGTGAAGATGCTGCTTTGAATGGTGAAGATGAAGATGGATTTCTGAAGGCTTTTAAGGTGGCAAATTTCGAATACATAGACGGAGTTAAGCCAGCAGAGGAGGTGGCACAAAATGAAGCAAAGGAGAATCAATTCTCTGGTGAAAGTTTGAGGATAATTATTTACTGGGAAGGCTTGTTGAGAAAAGCATATGAACAGTGTCAAGTTGAAAAGTTAAATGCCTTAGGCAAAGGGAAGCGAACACGCACCAAATGGGTGGGGGAAGGTTTTAGTAAATGGGTAGATCAAAGATCTGATGGTGAAGATGAAAATTATGAAGGGGATCATAGTGAATATGATTCAAATGAGACTACTACTCCTACTAGAAGGGTTCACGGAAAGAAATCTCGCGCAGAGAGCCCAGAGCCACATCCTTTGATGGAACGTCGAGGAAAATCGTTGAAAGTACTTGGTTTTAGTCCAAATCAAAGGGCTCAATTTCTTCAAATTATGATGAGGTTTGGTTTACGTGATTTTGATTGGAAAAAGTTTGCTTCCAGGATGAAACACAAGAGTTATGAAGAAATCATGGAGTATAGCTTACTTTTTTTGTCTCATGTTATAGAAGATATTACTGATTCACCTACATTCATAGATGGCGTTCCAAAAGAAGGACTTCAAATAAAAACTGCACTTCTAAGGATCGGTGTTATGAATTTGATAGCAAAAAAGGTGAAGCTTGCATTAGAAAATCCTGGAACACAACTTTTTTCAGATGATATCTTACCACGCCATCCACGTATGAAGGGTAGAAAGATATGGAAGGAGGTTCATGATTTACTGCTGCTGCAAGCCGTGTTGAAGCATGGCTATGCGAGGTGGCGTGATATTGTTGAAGATAAGGATCTGAAGATTCAGAAGGTTATCTGTGAGGAGTTGAATATTGCAGTTGCAGATATACCAGTTGAATTACAGTGTAACTCACGAGTGTTCAATGGTCCAAATATTACAAATGTGGAGTCTTGCTCCAGCTCCAACCAATCTAAGCAGAGTGAAATGCGCAGTTCTAGTAATCTTGGGAAGCACGCAAAGTCAAATATGGATTTCTTCCTGTTGGATCAGCATAGAAAAATGCAGAGAGCACAGATTCTGTTTATAAAGAGAAGGTTTCGTCTCTTGGAAGAAGGTCTCCTCGTTGAGTTCCAGAACAGATACCTTAGGAATTTGCCAGCAAAAGTGGCAGAAAACAACCAAGTTAAAGGCAGGCCCACGCGAGTTAATGTAAACAAGTTCATCGTCTTTGAGACTTTTCCTCGGCCTATAGTCAGAGTCATAAGTACACCGGACTTGTATTATTTTTTATTTGATTTTGATACAGAGCGTATAAACTTAATTGCTCTTTACAATGAGATGTGCCAGATTGTGGCGGCATTCGCCAAAGAATTAGCCCAAGCGGCAACAGATGAGGAACAATACGACGCTGTTGCCCGGTTAGGTCAAATCCTCAGCATTTGTTTCGATATCAATGAAGTTCTACATAAAAAAGATTAA 4035 0.4002 MSGSIRFRERSGCRPCYNFHDSDDDDVKSTENYNVGGSSTQQKRKNSDDSVVLPRKRGRPRKNIARSDTTESNVTPFAERLRDRSSIKKPNYNIDESDEDFDTFPSKYGNQEKVLKIESSDTVSPLKDIDKILDCEMRSVVAAESDAQKLESKRILVKQYLVKWKGLSYLHCTWVPEEEFLKAFKTQPGLKIRVNSFHRRMESAKSFDEDFVAIRPEWTMVDRILACRWGNDDKKEYLVKWKELPYDECHWELESNISAFQKEIERFYTFQCRTRTVLSNKKSSIAEASESNNLQREFVQYEASPEFLSGGSLYPYQLEGLNFLRYSWSKQTHVILADEMGLGKTIQSIAFMASLFEDNVCPHLVIAPLSTLRNWEREFATWAPEMNVVMYSGSADARALIREYEFYFPKGLRSKKGKEIVDERKRRRVKFDVLLTSYETIISDSSSLKPIKWECMIVDEGHRLKNKNSKLFSPLTQLSSQHRVLLTGTPLQNNLDELFMLMHFLDAEKFGSLEEFQKEFKDINREEQILRLQKMLAPHLLRRMKKDVMTELPPKKELILRVELCSVQKEFYKAILNRNYPILTRRARPHISLINVVMELRKLCCHPFMLNGLQPDLNDENPYDQLLESSGKLQLLDKMMVKLKEQGHRVLICSQFQKMLDLLEDYCCYKNWHYERIDGKVGGAERQEKIDRFNAEDSSRFCFLLSTRAGGLGINLTAADTVIIYDSDWNPHADLQAMARSHRHGQKKKVMIYRFIARGTIEERMIQLTKKKRVLEHLVVGRLQDENIKQKELDDIVRYGSEELFADENDEASRSRQIHYDDDAIDRLLDRDGVGGEDAALNGEDEDGFLKAFKVANFEYIDGVKPAEEVAQNEAKENQFSGESLRIIIYWEGLLRKAYEQCQVEKLNALGKGKRTRTKWVGEGFSKWVDQRSDGEDENYEGDHSEYDSNETTTPTRRVHGKKSRAESPEPHPLMERRGKSLKVLGFSPNQRAQFLQIMMRFGLRDFDWKKFASRMKHKSYEEIMEYSLLFLSHVIEDITDSPTFIDGVPKEGLQIKTALLRIGVMNLIAKKVKLALENPGTQLFSDDILPRHPRMKGRKIWKEVHDLLLLQAVLKHGYARWRDIVEDKDLKIQKVICEELNIAVADIPVELQCNSRVFNGPNITNVESCSSSNQSKQSEMRSSSNLGKHAKSNMDFFLLDQHRKMQRAQILFIKRRFRLLEEGLLVEFQNRYLRNLPAKVAENNQVKGRPTRVNVNKFIVFETFPRPIVRVISTPDLYYFLFDFDTERINLIALYNEMCQIVAAFAKELAQAATDEEQYDAVARLGQILSICFDINEVLHKKD 1344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00698 1344 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 325 508 IPR014001 -
Viun8g00698 1344 SMART ultradead3 309 516 IPR014001 -
Viun8g00698 1344 Pfam Helicase conserved C-terminal domain 632 745 IPR001650 -
Viun8g00698 1344 CDD SF2_C_SNF 630 756 - -
Viun8g00698 1344 ProSiteProfiles Chromo and chromo shadow domain profile. 127 209 IPR000953 -
Viun8g00698 1344 Pfam CHD subfamily II, SANT-like domain 956 1087 IPR009462 GO:0003677|GO:0006338
Viun8g00698 1344 Gene3D - 216 270 - -
Viun8g00698 1344 Pfam SNF2-related domain 333 609 IPR000330 GO:0005524|GO:0140658
Viun8g00698 1344 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 635 794 IPR001650 -
Viun8g00698 1344 MobiDBLite consensus disorder prediction 31 47 - -
Viun8g00698 1344 Gene3D - 553 776 IPR027417 -
Viun8g00698 1344 CDD CD2_tandem 217 268 - -
Viun8g00698 1344 MobiDBLite consensus disorder prediction 1 82 - -
Viun8g00698 1344 SMART DUF1086_2 933 1090 IPR009462 GO:0003677|GO:0006338
Viun8g00698 1344 Pfam CHD subfamily II, DUF1087 867 918 IPR009463 -
Viun8g00698 1344 SUPERFAMILY Chromo domain-like 119 183 IPR016197 -
Viun8g00698 1344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 545 799 IPR027417 -
Viun8g00698 1344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 543 IPR027417 -
Viun8g00698 1344 Gene3D - 305 552 IPR038718 -
Viun8g00698 1344 MobiDBLite consensus disorder prediction 932 975 - -
Viun8g00698 1344 Gene3D - 118 215 - -
Viun8g00698 1344 SMART chromo_7 217 272 IPR000953 -
Viun8g00698 1344 SMART chromo_7 126 189 IPR000953 -
Viun8g00698 1344 Coils Coil 513 533 - -
Viun8g00698 1344 ProSiteProfiles Chromo and chromo shadow domain profile. 219 268 IPR000953 -
Viun8g00698 1344 SMART helicmild6 661 745 IPR001650 -
Viun8g00698 1344 MobiDBLite consensus disorder prediction 1169 1188 - -
Viun8g00698 1344 Pfam Chromo (CHRromatin Organisation MOdifier) domain 220 268 IPR023780 -
Viun8g00698 1344 Pfam Chromo (CHRromatin Organisation MOdifier) domain 140 184 IPR023780 -
Viun8g00698 1344 Gene3D - 1057 1208 - -
Viun8g00698 1344 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 29 1184 - -
Viun8g00698 1344 SUPERFAMILY Chromo domain-like 209 269 IPR016197 -
Viun8g00698 1344 CDD CD1_tandem 125 199 - -
Viun8g00698 1344 MobiDBLite consensus disorder prediction 13 30 - -
Viun8g00698 1344 Pfam CHDCT2 (NUC038) domain 1100 1133 IPR012957 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00698 Viun-Chr8 5620056 5631169 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00698 630 796 RAD5 or RAD16-like Gene Family AT5G43530 36.686 2.11e-25 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun8g00698 SNF2_N 3.9e-63 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00698 K11643 - gmx:100790230 1558.89