Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00697 ATGAGTGGTTCGATTAGATTTCGTGAGAGATCGGGTTGTAGACCCTGCTACAACTTTCATGACTCAGATGATGACGATGTGAAATCTACAGAAAATTATCAGAATGTGGGTGGAAGCTCCACTCAACAAAAACGAAAAAATAGCGACGATTCAGTTGTTCTCCCGAGGAAACGAGGGAGACCTAGAAAAAACATCGCGAGAAGTGATACAACTGAGAGTAATGTGACCCCTTTTGCTGAGCGGCTTCGTGACAGATCAAGTATAAAGAAGCCGAACTATAATATTGACGAGTCTGATGAAGATTTTGATACTTTCCCCAGTAAATATGGGAACCAGGAAAAAGTTCTTAAAATCGAAAGCAGTGACACAGTTAGCCCACTCAAAGATATTGACAAGATATTAGATTGTGAGATGCGTTCTGTGGTGGCTGCTGAAAGTGATGCTCAAAAGTTGGAGTCAAAACGTATTTTGGTCAAGCAATATCTTGTTAAGTGGAAGGGACTCTCATATTTGCACTGCACATGGGTTCCAGAAGAAGAGTTTTTGAAGGCTTTCAAGACTCAGCCAGGTCTAAAGATCAGAGTAAACAGCTTCCATCGTCGTATGGAATCAGCCAAGAGTTTTGATGAAGATTTTGTTGCCATTAGACCCGAATGGACTATGGTTGATCGAATACTTGCTTGCAGGTGGGGTAACGATGATAAGAAGGAGTATCTGGTGAAGTGGAAAGAGCTTCCCTATGATGAGTGCCACTGGGAGCTGGAATCAAATATCTCTGCATTTCAGAAAGAAATAGAAAGATTCTACACATTTCAGTGTAGAACAAGGACAGTTTTGTCCAATAAGAAAAGTAGTATTGCAGAAGCTTCTGAATCTAATAATCTGCAGAGAGAATTTGTACAGTACGAAGCCAGCCCTGAGTTTCTTTCAGGGGGTTCACTGTATCCGTATCAGCTTGAAGGATTGAACTTCTTACGATATTCATGGTCCAAGCAAACTCACGTTATACTTGCTGATGAAATGGGACTTGGCAAAACCATACAGAGCATTGCTTTCATGGCATCGCTGTTTGAGGATAATGTTTGTCCCCATTTGGTGATTGCTCCCCTTTCAACTTTACGAAATTGGGAGCGTGAATTTGCTACGTGGGCACCTGAAATGAATGTTGTTATGTATTCTGGATCTGCCGATGCTCGTGCTTTAATCAGAGAGTATGAGTTTTACTTTCCTAAAGGTCTTCGCTCAAAGAAAGGCAAAGAAATCGTGGATGAAAGAAAAAGAAGAAGAGTAAAGTTTGACGTTCTATTAACGTCATACGAGACAATAATTTCCGACTCATCCTCGTTAAAACCTATAAAGTGGGAGTGCATGATAGTTGATGAGGGCCACCGTCTGAAGAACAAAAATTCTAAATTATTTTCTCCATTGACGCAATTATCAAGCCAACACCGTGTGCTTTTGACTGGAACTCCTCTTCAGAACAATTTGGATGAGCTTTTTATGCTGATGCACTTCCTTGATGCTGAAAAGTTTGGAAGTTTAGAGGAGTTTCAGAAAGAATTTAAGGATATCAATAGAGAGGAGCAGATTCTGAGACTACAAAAAATGTTGGCACCACATCTCTTGAGAAGAATGAAGAAAGATGTGATGACAGAACTACCTCCGAAAAAGGAACTTATTTTACGAGTTGAATTATGCAGTGTACAGAAAGAATTCTACAAGGCAATTCTGAATCGTAATTATCCTATATTAACCCGCCGAGCTCGTCCACATATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGCTGCCATCCCTTTATGTTAAATGGACTTCAACCTGATCTTAATGATGAAAATCCATATGACCAATTGCTTGAATCCTCTGGGAAGTTGCAACTGTTAGACAAGATGATGGTGAAACTTAAAGAGCAAGGTCATAGAGTCCTTATATGTTCCCAATTTCAGAAAATGCTGGACTTGCTTGAAGATTACTGTTGTTACAAGAATTGGCATTATGAGAGGATAGATGGGAAGGTTGGAGGAGCTGAAAGACAAGAAAAGATAGATCGGTTTAATGCTGAAGATTCTTCAAGATTTTGTTTTCTTCTTTCTACAAGAGCTGGGGGATTAGGGATAAACCTTACTGCAGCAGACACAGTTATTATATATGACAGTGATTGGAATCCTCATGCTGACTTGCAAGCCATGGCCAGGTCTCACCGCCATGGACAGAAAAAGAAGGTGATGATTTATAGGTTCATAGCAAGAGGAACAATTGAAGAAAGGATGATTCAGCTGACAAAGAAGAAAAGGGTGTTAGAACACCTGGTTGTAGGGAGGCTACAGGATGAAAACATTAAGCAGAAAGAGTTAGATGATATCGTAAGGTATGGCTCAGAGGAGCTATTTGCTGATGAAAATGATGAAGCAAGCAGGTCTCGTCAAATTCATTATGATGATGATGCTATAGACAGATTGCTGGATCGTGATGGAGTTGGAGGTGAAGATGCTGCTTTGAATGGTGAAGATGAAGATGGATTTCTGAAGGCTTTTAAGGTGGCAAATTTCGAATACATAGACGGAGTTAAGCCAGCAGAGGAGGTGGCACAAAATGAAGCAAAGGAGAATCAATTCTCTGGTGAAAGTTTGAGGATAATTATTTACTGGGAAGGCTTGTTGAGAAAAGCATATGAACAGTGTCAAGTTGAAAAGTTAAATGCCTTAGGCAAAGGGAAGCGAACACGCACCAAATGGGTGGGGGAAGGTTTTAGTAAATGGGTAGATCAAAGATCTGATGGTGAAGATGAAAATTATGAAGGGGATCATAGTGAATATGATTCAAATGAGACTACTACTCCTACTAGAAGGGTTCACGGAAAGAAATCTCGCGCAGAGAGCCCAGAGCCACATCCTTTGATGGAACGTCGAGGAAAATCGTTGAAAGTACTTGGTTTTAGTCCAAATCAAAGGGCTCAATTTCTTCAAATTATGATGAGGTTTGGTTTACGTGATTTTGATTGGAAAAAGTTTGCTTCCAGGATGAAACACAAGAGTTATGAAGAAATCATGGAGTATAGCTTACTTTTTTTGTCTCATGTTATAGAAGATATTACTGATTCACCTACATTCATAGATGGCGTTCCAAAAGAAGGACTTCAAATAAAAACTGCACTTCTAAGGATCGGTGTTATGAATTTGATAGCAAAAAAGGTGAAGCTTGCATTAGAAAATCCTGGAACACAACTTTTTTCAGATGATATCTTACCACGCCATCCACGTATGAAGGGTAGAAAGATATGGAAGGAGGTTCATGATTTACTGCTGCTGCAAGCCGTGTTGAAGCATGGCTATGCGAGGTGGCGTGATATTGTTGAAGATAAGGATCTGAAGATTCAGAAGGTTATCTGTGAGGAGTTGAATATTGCAGTTGCAGATATACCAGTTGAATTACAGTGTAACTCACGAGTGTTCAATGGTCCAAATATTACAAATGTGGAGTCTTGCTCCAGCTCCAACCAATCTAAGCAGAGTGAAATGCGCAGTTCTAGTAATCTTGGGAAGCACGCAAAGTCAAATATGGATTTCTTCCTGTTGGATCAGCATAGAAAAATGCAGAGAGCACAGATTCTGTTTATAAAGAGAAGGTTTCGTCTCTTGGAAGAAGGTCTCCTCGTTGAGTTCCAGAACAGATACCTTAGGAATTTGCCAGCAAAAGTGGCAGAAAACAACCAAGTTAAAGGCAGGCCCACGCGAGTTAATGTAAACAAGTTCATCGTCTTTGAGACTTTTCCTCGGCCTATAGTCAGAGTCATAAGTACACCGGACTTGTATTATTTTTTATTTGATTTTGATACAGAGCGTATAAACTTAATTGCTCTTTACAATGAGATGTGCCAGATTGTGGCGGCATTCGCCAAAGAATTAGCCCAAGCGGCAACAGATGAGGAACAATACGACGCTGTTGCCCGGTTAGGTCAAATCCTCAGCATTTGTTTCGATATCAATGAAGTTCTACATAAAAAAGATTAA 4038 0.4004 MSGSIRFRERSGCRPCYNFHDSDDDDVKSTENYQNVGGSSTQQKRKNSDDSVVLPRKRGRPRKNIARSDTTESNVTPFAERLRDRSSIKKPNYNIDESDEDFDTFPSKYGNQEKVLKIESSDTVSPLKDIDKILDCEMRSVVAAESDAQKLESKRILVKQYLVKWKGLSYLHCTWVPEEEFLKAFKTQPGLKIRVNSFHRRMESAKSFDEDFVAIRPEWTMVDRILACRWGNDDKKEYLVKWKELPYDECHWELESNISAFQKEIERFYTFQCRTRTVLSNKKSSIAEASESNNLQREFVQYEASPEFLSGGSLYPYQLEGLNFLRYSWSKQTHVILADEMGLGKTIQSIAFMASLFEDNVCPHLVIAPLSTLRNWEREFATWAPEMNVVMYSGSADARALIREYEFYFPKGLRSKKGKEIVDERKRRRVKFDVLLTSYETIISDSSSLKPIKWECMIVDEGHRLKNKNSKLFSPLTQLSSQHRVLLTGTPLQNNLDELFMLMHFLDAEKFGSLEEFQKEFKDINREEQILRLQKMLAPHLLRRMKKDVMTELPPKKELILRVELCSVQKEFYKAILNRNYPILTRRARPHISLINVVMELRKLCCHPFMLNGLQPDLNDENPYDQLLESSGKLQLLDKMMVKLKEQGHRVLICSQFQKMLDLLEDYCCYKNWHYERIDGKVGGAERQEKIDRFNAEDSSRFCFLLSTRAGGLGINLTAADTVIIYDSDWNPHADLQAMARSHRHGQKKKVMIYRFIARGTIEERMIQLTKKKRVLEHLVVGRLQDENIKQKELDDIVRYGSEELFADENDEASRSRQIHYDDDAIDRLLDRDGVGGEDAALNGEDEDGFLKAFKVANFEYIDGVKPAEEVAQNEAKENQFSGESLRIIIYWEGLLRKAYEQCQVEKLNALGKGKRTRTKWVGEGFSKWVDQRSDGEDENYEGDHSEYDSNETTTPTRRVHGKKSRAESPEPHPLMERRGKSLKVLGFSPNQRAQFLQIMMRFGLRDFDWKKFASRMKHKSYEEIMEYSLLFLSHVIEDITDSPTFIDGVPKEGLQIKTALLRIGVMNLIAKKVKLALENPGTQLFSDDILPRHPRMKGRKIWKEVHDLLLLQAVLKHGYARWRDIVEDKDLKIQKVICEELNIAVADIPVELQCNSRVFNGPNITNVESCSSSNQSKQSEMRSSSNLGKHAKSNMDFFLLDQHRKMQRAQILFIKRRFRLLEEGLLVEFQNRYLRNLPAKVAENNQVKGRPTRVNVNKFIVFETFPRPIVRVISTPDLYYFLFDFDTERINLIALYNEMCQIVAAFAKELAQAATDEEQYDAVARLGQILSICFDINEVLHKKD 1345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00697 1345 Gene3D - 306 553 IPR038718 -
Viun8g00697 1345 MobiDBLite consensus disorder prediction 933 976 - -
Viun8g00697 1345 Coils Coil 514 534 - -
Viun8g00697 1345 SUPERFAMILY Chromo domain-like 210 270 IPR016197 -
Viun8g00697 1345 MobiDBLite consensus disorder prediction 31 48 - -
Viun8g00697 1345 CDD CD2_tandem 218 269 - -
Viun8g00697 1345 ProSiteProfiles Chromo and chromo shadow domain profile. 128 210 IPR000953 -
Viun8g00697 1345 Pfam CHD subfamily II, SANT-like domain 957 1088 IPR009462 GO:0003677|GO:0006338
Viun8g00697 1345 SMART chromo_7 218 273 IPR000953 -
Viun8g00697 1345 SMART chromo_7 127 190 IPR000953 -
Viun8g00697 1345 Pfam SNF2-related domain 334 610 IPR000330 GO:0005524|GO:0140658
Viun8g00697 1345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 544 IPR027417 -
Viun8g00697 1345 Pfam Helicase conserved C-terminal domain 633 746 IPR001650 -
Viun8g00697 1345 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 326 509 IPR014001 -
Viun8g00697 1345 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 636 795 IPR001650 -
Viun8g00697 1345 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 33 1185 - -
Viun8g00697 1345 MobiDBLite consensus disorder prediction 1170 1189 - -
Viun8g00697 1345 SUPERFAMILY Chromo domain-like 120 184 IPR016197 -
Viun8g00697 1345 CDD CD1_tandem 126 200 - -
Viun8g00697 1345 Pfam Chromo (CHRromatin Organisation MOdifier) domain 141 185 IPR023780 -
Viun8g00697 1345 Pfam Chromo (CHRromatin Organisation MOdifier) domain 221 269 IPR023780 -
Viun8g00697 1345 Gene3D - 554 777 IPR027417 -
Viun8g00697 1345 Gene3D - 119 216 - -
Viun8g00697 1345 Gene3D - 217 271 - -
Viun8g00697 1345 SMART ultradead3 310 517 IPR014001 -
Viun8g00697 1345 SMART DUF1086_2 934 1091 IPR009462 GO:0003677|GO:0006338
Viun8g00697 1345 Pfam CHD subfamily II, DUF1087 868 919 IPR009463 -
Viun8g00697 1345 CDD SF2_C_SNF 631 757 - -
Viun8g00697 1345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 546 800 IPR027417 -
Viun8g00697 1345 Gene3D - 1058 1209 - -
Viun8g00697 1345 MobiDBLite consensus disorder prediction 1 75 - -
Viun8g00697 1345 SMART helicmild6 662 746 IPR001650 -
Viun8g00697 1345 ProSiteProfiles Chromo and chromo shadow domain profile. 220 269 IPR000953 -
Viun8g00697 1345 MobiDBLite consensus disorder prediction 13 30 - -
Viun8g00697 1345 Pfam CHDCT2 (NUC038) domain 1101 1134 IPR012957 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00697 Viun-Chr8 5620056 5631169 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00697 631 797 RAD5 or RAD16-like Gene Family AT5G43530 36.686 2.19e-25 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun8g00697 SNF2_N 3.9e-63 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00697 K11643 - gmx:100790230 1558.89