Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00696 ATGAGTGGTTCGATTAGATTTCGTGAGAGATCGGGTTGTAGACCCTGCTACAACTTTCATGACTCAGATGATGACGATGTGAAATCTACAGAAAATTATGTGAGTATTGATGGAAATGATGGTAATGTGGGTGGAAGCTCCACTCAACAAAAACGAAAAAATAGCGACGATTCAGTTGTTCTCCCGAGGAAACGAGGGAGACCTAGAAAAAACATCGCGAGAAGTGATACAACTGAGAGTAATGTGACCCCTTTTGCTGAGCGGCTTCGTGACAGATCAAGTATAAAGAAGCCGAACTATAATATTGACGAGTCTGATGAAGATTTTGATACTTTCCCCAGTAAATATGGGAACCAGGAAAAAGTTCTTAAAATCGAAAGCAGTGACACAGTTAGCCCACTCAAAGATATTGACAAGATATTAGATTGTGAGATGCGTTCTGTGGTGGCTGCTGAAAGTGATGCTCAAAAGTTGGAGTCAAAACGTATTTTGGTCAAGCAATATCTTGTTAAGTGGAAGGGACTCTCATATTTGCACTGCACATGGGTTCCAGAAGAAGAGTTTTTGAAGGCTTTCAAGACTCAGCCAGGTCTAAAGATCAGAGTAAACAGCTTCCATCGTCGTATGGAATCAGCCAAGAGTTTTGATGAAGATTTTGTTGCCATTAGACCCGAATGGACTATGGTTGATCGAATACTTGCTTGCAGGTGGGGTAACGATGATAAGAAGGAGTATCTGGTGAAGTGGAAAGAGCTTCCCTATGATGAGTGCCACTGGGAGCTGGAATCAAATATCTCTGCATTTCAGAAAGAAATAGAAAGATTCTACACATTTCAGTGTAGAACAAGGACAGTTTTGTCCAATAAGAAAAGTAGTATTGCAGAAGCTTCTGAATCTAATAATCTGCAGAGAGAATTTGTACAGTACGAAGCCAGCCCTGAGTTTCTTTCAGGGGGTTCACTGTATCCGTATCAGCTTGAAGGATTGAACTTCTTACGATATTCATGGTCCAAGCAAACTCACGTTATACTTGCTGATGAAATGGGACTTGGCAAAACCATACAGAGCATTGCTTTCATGGCATCGCTGTTTGAGGATAATGTTTGTCCCCATTTGGTGATTGCTCCCCTTTCAACTTTACGAAATTGGGAGCGTGAATTTGCTACGTGGGCACCTGAAATGAATGTTGTTATGTATTCTGGATCTGCCGATGCTCGTGCTTTAATCAGAGAGTATGAGTTTTACTTTCCTAAAGGTCTTCGCTCAAAGAAAGGCAAAGAAATCGTGGATGAAAGAAAAAGAAGAAGAGTAAAGTTTGACGTTCTATTAACGTCATACGAGACAATAATTTCCGACTCATCCTCGTTAAAACCTATAAAGTGGGAGTGCATGATAGTTGATGAGGGCCACCGTCTGAAGAACAAAAATTCTAAATTATTTTCTCCATTGACGCAATTATCAAGCCAACACCGTGTGCTTTTGACTGGAACTCCTCTTCAGAACAATTTGGATGAGCTTTTTATGCTGATGCACTTCCTTGATGCTGAAAAGTTTGGAAGTTTAGAGGAGTTTCAGAAAGAATTTAAGGATATCAATAGAGAGGAGCAGATTCTGAGACTACAAAAAATGTTGGCACCACATCTCTTGAGAAGAATGAAGAAAGATGTGATGACAGAACTACCTCCGAAAAAGGAACTTATTTTACGAGTTGAATTATGCAGTGTACAGAAAGAATTCTACAAGGCAATTCTGAATCGTAATTATCCTATATTAACCCGCCGAGCTCGTCCACATATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGCTGCCATCCCTTTATGTTAAATGGACTTCAACCTGATCTTAATGATGAAAATCCATATGACCAATTGCTTGAATCCTCTGGGAAGTTGCAACTGTTAGACAAGATGATGGTGAAACTTAAAGAGCAAGGTCATAGAGTCCTTATATGTTCCCAATTTCAGAAAATGCTGGACTTGCTTGAAGATTACTGTTGTTACAAGAATTGGCATTATGAGAGGATAGATGGGAAGGTTGGAGGAGCTGAAAGACAAGAAAAGATAGATCGGTTTAATGCTGAAGATTCTTCAAGATTTTGTTTTCTTCTTTCTACAAGAGCTGGGGGATTAGGGATAAACCTTACTGCAGCAGACACAGTTATTATATATGACAGTGATTGGAATCCTCATGCTGACTTGCAAGCCATGGCCAGGTCTCACCGCCATGGACAGAAAAAGAAGGTGATGATTTATAGGTTCATAGCAAGAGGAACAATTGAAGAAAGGATGATTCAGCTGACAAAGAAGAAAAGGGTGTTAGAACACCTGGTTGTAGGGAGGCTACAGGATGAAAACATTAAGCAGAAAGAGTTAGATGATATCGTAAGGTATGGCTCAGAGGAGCTATTTGCTGATGAAAATGATGAAGCAAGCAGGTCTCGTCAAATTCATTATGATGATGATGCTATAGACAGATTGCTGGATCGTGATGGAGTTGGAGGTGAAGATGCTGCTTTGAATGGTGAAGATGAAGATGGATTTCTGAAGGCTTTTAAGGTGGCAAATTTCGAATACATAGACGGAGTTAAGCCAGCAGAGGAGGTGGCACAAAATGAAGCAAAGGAGAATCAATTCTCTGGTGAAAGTTTGAGGATAATTATTTACTGGGAAGGCTTGTTGAGAAAAGCATATGAACAGTGTCAAGTTGAAAAGTTAAATGCCTTAGGCAAAGGGAAGCGAACACGCACCAAATGGGTGGGGGAAGGTTTTAGTAAATGGGTAGATCAAAGATCTGATGGTGAAGATGAAAATTATGAAGGGGATCATAGTGAATATGATTCAAATGAGACTACTACTCCTACTAGAAGGGTTCACGGAAAGAAATCTCGCGAGAGCCCAGAGCCACATCCTTTGATGGAACGTCGAGGAAAATCGTTGAAAGTACTTGGTTTTAGTCCAAATCAAAGGGCTCAATTTCTTCAAATTATGATGAGGTTTGGTTTACGTGATTTTGATTGGAAAAAGTTTGCTTCCAGGATGAAACACAAGAGTTATGAAGAAATCATGGAGTATAGCTTACTTTTTTTGTCTCATGTTATAGAAGATATTACTGATTCACCTACATTCATAGATGGCGTTCCAAAAGAAGGACTTCAAATAAAAACTGCACTTCTAAGGATCGGTGTTATGAATTTGATAGCAAAAAAGGTGAAGCTTGCATTAGAAAATCCTGGAACACAACTTTTTTCAGATGATATCTTACCACGCCATCCACGTATGAAGGGTAGAAAGATATGGAAGGAGGTTCATGATTTACTGCTGCTGCAAGCCGTGTTGAAGCATGGCTATGCGAGGTGGCGTGATATTGTTGAAGATAAGGATCTGAAGATTCAGAAGGTTATCTGTGAGGAGTTGAATATTGCAGTTGCAGATATACCAGTTGAATTACAGTGTAACTCACGAGTGTTCAATGGTCCAAATATTACAAATGTGGAGTCTTGCTCCAGCTCCAACCAATCTAAGCAGAGTGAAATGCGCAGTTCTAGTAATCTTGGGAAGCACGCAAAGTCAAATATGGATTTCTTCCTGTTGGATCAGCATAGAAAAATGCAGAGAGCACAGATTCTGTTTATAAAGAGAAGGTTTCGTCTCTTGGAAGAAGGTCTCCTCGTTGAGTTCCAGAACAGATACCTTAGGAATTTGCCAGCAAAAGTGGCAGAAAACAACCAAGTTAAAGGCAGGCCCACGCGAGTTAATGTAAACAAGTTCATCGTCTTTGAGACTTTTCCTCGGCCTATAGTCAGAGTCATAAGTACACCGGACTTGTATTATTTTTTATTTGATTTTGATACAGAGCGTATAAACTTAATTGCTCTTTACAATGAGATGTGCCAGATTGTGGCGGCATTCGCCAAAGAATTAGCCCAAGCGGCAACAGATGAGGAACAATACGACGCTGTTGCCCGGTTAGGTCAAATCCTCAGCATTTGTTTCGATATCAATGAAGTTCTACATAAAAAAGATTAA 4056 0.3999 MSGSIRFRERSGCRPCYNFHDSDDDDVKSTENYVSIDGNDGNVGGSSTQQKRKNSDDSVVLPRKRGRPRKNIARSDTTESNVTPFAERLRDRSSIKKPNYNIDESDEDFDTFPSKYGNQEKVLKIESSDTVSPLKDIDKILDCEMRSVVAAESDAQKLESKRILVKQYLVKWKGLSYLHCTWVPEEEFLKAFKTQPGLKIRVNSFHRRMESAKSFDEDFVAIRPEWTMVDRILACRWGNDDKKEYLVKWKELPYDECHWELESNISAFQKEIERFYTFQCRTRTVLSNKKSSIAEASESNNLQREFVQYEASPEFLSGGSLYPYQLEGLNFLRYSWSKQTHVILADEMGLGKTIQSIAFMASLFEDNVCPHLVIAPLSTLRNWEREFATWAPEMNVVMYSGSADARALIREYEFYFPKGLRSKKGKEIVDERKRRRVKFDVLLTSYETIISDSSSLKPIKWECMIVDEGHRLKNKNSKLFSPLTQLSSQHRVLLTGTPLQNNLDELFMLMHFLDAEKFGSLEEFQKEFKDINREEQILRLQKMLAPHLLRRMKKDVMTELPPKKELILRVELCSVQKEFYKAILNRNYPILTRRARPHISLINVVMELRKLCCHPFMLNGLQPDLNDENPYDQLLESSGKLQLLDKMMVKLKEQGHRVLICSQFQKMLDLLEDYCCYKNWHYERIDGKVGGAERQEKIDRFNAEDSSRFCFLLSTRAGGLGINLTAADTVIIYDSDWNPHADLQAMARSHRHGQKKKVMIYRFIARGTIEERMIQLTKKKRVLEHLVVGRLQDENIKQKELDDIVRYGSEELFADENDEASRSRQIHYDDDAIDRLLDRDGVGGEDAALNGEDEDGFLKAFKVANFEYIDGVKPAEEVAQNEAKENQFSGESLRIIIYWEGLLRKAYEQCQVEKLNALGKGKRTRTKWVGEGFSKWVDQRSDGEDENYEGDHSEYDSNETTTPTRRVHGKKSRESPEPHPLMERRGKSLKVLGFSPNQRAQFLQIMMRFGLRDFDWKKFASRMKHKSYEEIMEYSLLFLSHVIEDITDSPTFIDGVPKEGLQIKTALLRIGVMNLIAKKVKLALENPGTQLFSDDILPRHPRMKGRKIWKEVHDLLLLQAVLKHGYARWRDIVEDKDLKIQKVICEELNIAVADIPVELQCNSRVFNGPNITNVESCSSSNQSKQSEMRSSSNLGKHAKSNMDFFLLDQHRKMQRAQILFIKRRFRLLEEGLLVEFQNRYLRNLPAKVAENNQVKGRPTRVNVNKFIVFETFPRPIVRVISTPDLYYFLFDFDTERINLIALYNEMCQIVAAFAKELAQAATDEEQYDAVARLGQILSICFDINEVLHKKD 1351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00696 1351 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 643 802 IPR001650 -
Viun8g00696 1351 CDD SF2_C_SNF 638 764 - -
Viun8g00696 1351 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 551 IPR027417 -
Viun8g00696 1351 SMART chromo_7 134 197 IPR000953 -
Viun8g00696 1351 SMART chromo_7 225 280 IPR000953 -
Viun8g00696 1351 Pfam CHD subfamily II, DUF1087 875 926 IPR009463 -
Viun8g00696 1351 SMART DUF1086_2 941 1097 IPR009462 GO:0003677|GO:0006338
Viun8g00696 1351 Gene3D - 561 784 IPR027417 -
Viun8g00696 1351 CDD CD2_tandem 225 276 - -
Viun8g00696 1351 Gene3D - 126 223 - -
Viun8g00696 1351 Pfam Helicase conserved C-terminal domain 640 753 IPR001650 -
Viun8g00696 1351 Pfam CHD subfamily II, SANT-like domain 964 1094 IPR009462 GO:0003677|GO:0006338
Viun8g00696 1351 SUPERFAMILY Chromo domain-like 127 191 IPR016197 -
Viun8g00696 1351 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 41 1191 - -
Viun8g00696 1351 MobiDBLite consensus disorder prediction 32 55 - -
Viun8g00696 1351 MobiDBLite consensus disorder prediction 940 982 - -
Viun8g00696 1351 Pfam Chromo (CHRromatin Organisation MOdifier) domain 148 192 IPR023780 -
Viun8g00696 1351 Pfam Chromo (CHRromatin Organisation MOdifier) domain 228 276 IPR023780 -
Viun8g00696 1351 ProSiteProfiles Chromo and chromo shadow domain profile. 227 276 IPR000953 -
Viun8g00696 1351 MobiDBLite consensus disorder prediction 1 81 - -
Viun8g00696 1351 SUPERFAMILY Chromo domain-like 217 277 IPR016197 -
Viun8g00696 1351 SMART helicmild6 669 753 IPR001650 -
Viun8g00696 1351 SMART ultradead3 317 524 IPR014001 -
Viun8g00696 1351 Pfam SNF2-related domain 341 617 IPR000330 GO:0005524|GO:0140658
Viun8g00696 1351 MobiDBLite consensus disorder prediction 1176 1195 - -
Viun8g00696 1351 MobiDBLite consensus disorder prediction 13 31 - -
Viun8g00696 1351 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 333 516 IPR014001 -
Viun8g00696 1351 Coils Coil 521 541 - -
Viun8g00696 1351 Gene3D - 224 278 - -
Viun8g00696 1351 Gene3D - 313 560 IPR038718 -
Viun8g00696 1351 CDD CD1_tandem 133 207 - -
Viun8g00696 1351 ProSiteProfiles Chromo and chromo shadow domain profile. 135 217 IPR000953 -
Viun8g00696 1351 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 553 807 IPR027417 -
Viun8g00696 1351 Pfam CHDCT2 (NUC038) domain 1107 1140 IPR012957 -
Viun8g00696 1351 Gene3D - 1064 1215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00696 Viun-Chr8 5620056 5631169 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00696 638 804 RAD5 or RAD16-like Gene Family AT5G22750 35.329 1.90e-25 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun8g00696 SNF2_N 4e-63 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00696 K11643 - gmx:100790230 1556.96