Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00692 ATGGCAAACTTCCACCGTAACAACGTCGAGAACGTGGTCCTCGGTCACCACCGTTCCAAGAGCACCTCCGTCGCCGGTGGCCACTTCCGCCTATGGCACTCCCTCTCCACCGCCTCCTTCCGCCGCCTGGTCTTCGATGCCGTCAGCTGCGGCGCTAGCTCCCGCTACGCAGAGAGATCGGACACGTCCTCCGAGAAACACCACCACCAAGCGAAACAACAGCACCGGCACAAGACGAAGCTGAATAACGCAAAGTCGGAGAAGCTCTCGGATCTGCTGAACCTCGCGGAGGTCGAAGCTGATGCGGAAACGAGGAAGAAAGAGGACAAACTCGAGGAGCTGAAAAGCCTAGTGAAGGAGCTTCATGAGGAGGAAGAGAAAGAAGAAGAATCAATGACGCGGAGAAGAGAAGCTGCTTGGAAGGTGAGGTTGCTAGCCAAAGAGGATTTGGAAGTTAGAGGGACGCTCGCGATGCTTGGAGCTATTCCTCCTCTCGTCGCAATGCTTGATGAATCCAAAAACGACGTCGATTTGCTCGTTGCTTCTCTCTACGCGCTGCTCAACCTCGGAATTGGAAACGACGCGAATAAAGCAGCTATTGTGAAAGTTGGGTCAGTTGAGAAGATGCTGAAGCTGATTGAGTCTCCAGATGGTGTAGATTCTTCGGTTTCTGAAGCAATTGTTGCGAATTTCCTTGGACTTAGTGCGTTGGATTCGAATAAGCCCATAATTGGGTCTTCGGCTTCAATTTCTTTCTTAGTTAGAACCCTTCAGAGTTTAGATGACAAGAGTAGTTCCCAAGCCAAGCAAGATGCTCTACGGGCATTGTACAATCTTTCGATCTACCCAGCCAATGTTGCATTCGTTTTGGAAACAGATTTAGTTCTGTTTCTGGTGAACTCAATAGGGGACATGGAGGTAACTGAAAGAGCCCTTGCGATTCTCAGCAACTTGGTGTCGACCCGAGAGGGTAGGAAGGCGATTAGCGCAGTGCAAGATTCGATTCCGATCCTGGTGGATGTGTTGAATTGGACAGATTCGCCAGAATGCCAGGAGAAGGCGTCCTACATTTTGATGGTTATGGCACACAAGTCTTATGGGGACAAACAGGCCATGATTGAGGCAGGGGTTGCGTCATCACTGCTTGAGTTGTCCCTTTTGGGTTCCACATTGGCTCAGAAAAGGGCTTCAAGGATACTAGAAATTTTGAGGGTTGACAAAGGGAAACAGATTTCTGGGAGCTATGGCTTGGGTGCTGCCGTCTCTGCCCCTATTTGCGGCTCTTCGTCCGCGAAGCCGGATGACGGAGGGAGGGAGTGTTATGACGAGGAGGAAGATATGATGAGTGAGGAAAAGAAAGCAGTGAAGCAACTAGTCCAACAGAGTTTGCAGAACAACATGAGGAAAATTGTGAAAAGGGCCAATTTGCCTCACGATATTGTACCATCGGATCATTTTAAGTCACTCACATCAAGTTCTACTTCGAAGAGCCTACCATTTTGA 1503 0.497 MANFHRNNVENVVLGHHRSKSTSVAGGHFRLWHSLSTASFRRLVFDAVSCGASSRYAERSDTSSEKHHHQAKQQHRHKTKLNNAKSEKLSDLLNLAEVEADAETRKKEDKLEELKSLVKELHEEEEKEEESMTRRREAAWKVRLLAKEDLEVRGTLAMLGAIPPLVAMLDESKNDVDLLVASLYALLNLGIGNDANKAAIVKVGSVEKMLKLIESPDGVDSSVSEAIVANFLGLSALDSNKPIIGSSASISFLVRTLQSLDDKSSSQAKQDALRALYNLSIYPANVAFVLETDLVLFLVNSIGDMEVTERALAILSNLVSTREGRKAISAVQDSIPILVDVLNWTDSPECQEKASYILMVMAHKSYGDKQAMIEAGVASSLLELSLLGSTLAQKRASRILEILRVDKGKQISGSYGLGAAVSAPICGSSSAKPDDGGRECYDEEEDMMSEEKKAVKQLVQQSLQNNMRKIVKRANLPHDIVPSDHFKSLTSSSTSKSLPF 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00692 500 Coils Coil 441 461 - -
Viun8g00692 500 SMART arm_5 149 191 IPR000225 GO:0005515
Viun8g00692 500 SMART arm_5 237 281 IPR000225 GO:0005515
Viun8g00692 500 SMART arm_5 193 236 IPR000225 GO:0005515
Viun8g00692 500 SMART arm_5 282 320 IPR000225 GO:0005515
Viun8g00692 500 SMART arm_5 324 363 IPR000225 GO:0005515
Viun8g00692 500 SUPERFAMILY ARM repeat 114 403 IPR016024 -
Viun8g00692 500 Coils Coil 93 134 - -
Viun8g00692 500 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 23 500 - -
Viun8g00692 500 Gene3D - 53 263 IPR011989 -
Viun8g00692 500 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 204 IPR000225 GO:0005515
Viun8g00692 500 MobiDBLite consensus disorder prediction 56 86 - -
Viun8g00692 500 Gene3D - 264 409 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00692 Viun-Chr8 5550605 5554043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00692 98 433 U-box Gene Family AT1G24330 28.771 9.97e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00692 - - gmx:100788575 702.975