LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun8g00692	ATGGCAAACTTCCACCGTAACAACGTCGAGAACGTGGTCCTCGGTCACCACCGTTCCAAGAGCACCTCCGTCGCCGGTGGCCACTTCCGCCTATGGCACTCCCTCTCCACCGCCTCCTTCCGCCGCCTGGTCTTCGATGCCGTCAGCTGCGGCGCTAGCTCCCGCTACGCAGAGAGATCGGACACGTCCTCCGAGAAACACCACCACCAAGCGAAACAACAGCACCGGCACAAGACGAAGCTGAATAACGCAAAGTCGGAGAAGCTCTCGGATCTGCTGAACCTCGCGGAGGTCGAAGCTGATGCGGAAACGAGGAAGAAAGAGGACAAACTCGAGGAGCTGAAAAGCCTAGTGAAGGAGCTTCATGAGGAGGAAGAGAAAGAAGAAGAATCAATGACGCGGAGAAGAGAAGCTGCTTGGAAGGTGAGGTTGCTAGCCAAAGAGGATTTGGAAGTTAGAGGGACGCTCGCGATGCTTGGAGCTATTCCTCCTCTCGTCGCAATGCTTGATGAATCCAAAAACGACGTCGATTTGCTCGTTGCTTCTCTCTACGCGCTGCTCAACCTCGGAATTGGAAACGACGCGAATAAAGCAGCTATTGTGAAAGTTGGGTCAGTTGAGAAGATGCTGAAGCTGATTGAGTCTCCAGATGGTGTAGATTCTTCGGTTTCTGAAGCAATTGTTGCGAATTTCCTTGGACTTAGTGCGTTGGATTCGAATAAGCCCATAATTGGGTCTTCGGCTTCAATTTCTTTCTTAGTTAGAACCCTTCAGAGTTTAGATGACAAGAGTAGTTCCCAAGCCAAGCAAGATGCTCTACGGGCATTGTACAATCTTTCGATCTACCCAGCCAATGTTGCATTCGTTTTGGAAACAGATTTAGTTCTGTTTCTGGTGAACTCAATAGGGGACATGGAGGTAACTGAAAGAGCCCTTGCGATTCTCAGCAACTTGGTGTCGACCCGAGAGGGTAGGAAGGCGATTAGCGCAGTGCAAGATTCGATTCCGATCCTGGTGGATGTGTTGAATTGGACAGATTCGCCAGAATGCCAGGAGAAGGCGTCCTACATTTTGATGGTTATGGCACACAAGTCTTATGGGGACAAACAGGCCATGATTGAGGCAGGGGTTGCGTCATCACTGCTTGAGTTGTCCCTTTTGGGTTCCACATTGGCTCAGAAAAGGGCTTCAAGGATACTAGAAATTTTGAGGGTTGACAAAGGGAAACAGATTTCTGGGAGCTATGGCTTGGGTGCTGCCGTCTCTGCCCCTATTTGCGGCTCTTCGTCCGCGAAGCCGGATGACGGAGGGAGGGAGTGTTATGACGAGGAGGAAGATATGATGAGTGAGGAAAAGAAAGCAGTGAAGCAACTAGTCCAACAGAGTTTGCAGAACAACATGAGGAAAATTGTGAAAAGGGCCAATTTGCCTCACGATATTGTACCATCGGATCATTTTAAGTCACTCACATCAAGTTCTACTTCGAAGAGCCTACCATTTTGA	1503	0.497	MANFHRNNVENVVLGHHRSKSTSVAGGHFRLWHSLSTASFRRLVFDAVSCGASSRYAERSDTSSEKHHHQAKQQHRHKTKLNNAKSEKLSDLLNLAEVEADAETRKKEDKLEELKSLVKELHEEEEKEEESMTRRREAAWKVRLLAKEDLEVRGTLAMLGAIPPLVAMLDESKNDVDLLVASLYALLNLGIGNDANKAAIVKVGSVEKMLKLIESPDGVDSSVSEAIVANFLGLSALDSNKPIIGSSASISFLVRTLQSLDDKSSSQAKQDALRALYNLSIYPANVAFVLETDLVLFLVNSIGDMEVTERALAILSNLVSTREGRKAISAVQDSIPILVDVLNWTDSPECQEKASYILMVMAHKSYGDKQAMIEAGVASSLLELSLLGSTLAQKRASRILEILRVDKGKQISGSYGLGAAVSAPICGSSSAKPDDGGRECYDEEEDMMSEEKKAVKQLVQQSLQNNMRKIVKRANLPHDIVPSDHFKSLTSSSTSKSLPF	500

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun8g00692	500	Coils	Coil	441	461	-	-
	Viun8g00692	500	SMART	arm_5	149	191	IPR000225	GO:0005515
	Viun8g00692	500	SMART	arm_5	237	281	IPR000225	GO:0005515
	Viun8g00692	500	SMART	arm_5	193	236	IPR000225	GO:0005515
	Viun8g00692	500	SMART	arm_5	282	320	IPR000225	GO:0005515
	Viun8g00692	500	SMART	arm_5	324	363	IPR000225	GO:0005515
	Viun8g00692	500	SUPERFAMILY	ARM repeat	114	403	IPR016024	-
	Viun8g00692	500	Coils	Coil	93	134	-	-
	Viun8g00692	500	PANTHER	ARM REPEAT SUPERFAMILY PROTEIN	23	500	-	-
	Viun8g00692	500	Gene3D	-	53	263	IPR011989	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun8g00692	Viun-Chr8	5550605	5554043	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun8g00692	98	433	U-box Gene Family	AT1G24330	28.771	9.97e-32	127

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun8g00692	-		-	gmx:100788575	702.975

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