LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun8g00684	ATGATGATGCTTTTCTTTTTCATATATTATTCATTCATCACTCACAAGTTGAAGATTGCATTTTTCCAAGTTTCAATCTTCACTCATCAAACCATGTTCGGCAATCATCACTTCCTTCTCTTCATCTTCTTCACCACCTTCTCCTTCTTCTCTCCCAATCATTCCCTCTTCTTCAACATTACCAACTTCGATGATCCAACAACCTCGTCCGACATATCCTACCAGGGTGATGGAAGATCAACCAACGGCTCCATCGACCTCAACAAAGTTAGCTACTATTTTCGTGTCGGAAGGGCTCTCTACTCCAAACCCCTCCACCTCTGGGACCCATCTTCCAATGTTGTCACCGACTTTGTCACGCGCTTCACCTTCTCCATTGACAGAGTGAACAACTCTGAGACCTTTTATGCAGATGGCTTTGCGTTTTACCTAGCCCCTCTCGGCTACCAGATCCCACCAAATTCCGCAGGTGGCACCTTTGCCCTCTTCAACGCCACCACCAACAGTGACCTCCCTGAAAACCATGTTTTTGCTGTGGAGTTTGACACCTTCATTGGCTCCACTGACCCCCCAATGAAACATGTCGGTGTAGACGACAACTCTTTAACCTCTGTGGCGTTTGCCAACTTTGACATCGACAAGAACCTCGGAAAAAAGTGTCACGCTTTGATCACCTACACCGCCTCCTCTCAAACCCTCTTTGTTGCTTGGTCCTTCAAAGGAATACCAACCGCAAAGGACAACGACAACAACTCTTCTCTGTCTTACCAGGTCGACCTCAAGAAAATTCTCCCAGAGTGGGTCAATATTGGTTTCTCTGCCTCGACCGGACTTTACACCGAACACAATGTTATTTATTCGTGGGAGTTCAATTCCACTTTGAAAGATTCCTCCGTGGATAATGGTGTGAAACTAAACCATAAAGGGTCAAAGGTCGTGTTAATAGTTGCCGTTCTTTGTCCACTGGTTCTTCTGTTTGTGGCGGCGAGTGTTTTTGTCTTCGTGCTGATAAGGAAAAAGAGAAGAATGGATGATTGTATGTTGTATGATGCCGGAGACGATGAAGTTGGTCCAACTTCAGTTAAATTTGATCTGGACAGAGGAACTATCCCGAGAAGATTCGAGTACAAAGAGCTAGTGGATGCAACTAACGGTTTTTCAGATGAAAGAAGGCTGGGACAAGGAGCTTCGGGGCAGGTATACAAGGGTGTGTTGAGTTACCTGGGAAGAGTAGTGGCCGTGAAGAGAATCTTTGCAGACTTCGAGAATTCAGAGAGGGTTTTCATCAACGAGGTGAGAATAATAAGCCGTTTGATCCACAAAAACTTGGTCCAGTTCATAGGGTGGTGTCACGAAGAAGGTGAATTTCTGTTGGTTTTCGAGTACATGCAAAACGGAAGCCTGGACTCTCATCTGTTTGGAAACAAGAGGATGTTGCAGTGGCGTGCGAGGTACAAGATTGCTCTGGGCGTTGCAACAGCGCTTCACTATCTTCACGAGGACGCAGAGCAATGTGTGCTACACAGGGACATAAAATCCGCGAATGTGTTGCTGGACATGGAATTCAACACGAAGGTGGGGGATTTTGGCATGGCGAAATTGGTGGATCCAAGGCTGAGAACTCAACGAACAGGGGTGGTCGGAACTTACGGTTACTTAGCACCTGAGTATGTGAACGTAGGAAGAGCTAGCAGGGAATCAGACATGTACAGTTTTGGAGTGGTGGCGTTGGAGATAGCAAGTGGGAGGAGGACATACCAAGATGGTGAGTTTCATGTTAGTTTGATGAATTGGGTGTGGCAGCTTTATGTGGAAGGGGAAATTCTGAGGGCTGCGGATGAGAAATTGTGTGAGGAGTTTGATGAGAATGAGATGAGGAGTTTGCTTGTGGTGGGGCTGTGGTGCACAAACCCTAATGATAAAGAGAGGCCTAAGGCTGCACAAGTGATCAAGGTTTTGCAGCTTGAAGCACCATTGCCGTTTCTTCCACTTGATATGTATGAACGTGCTCCTCCCATGCAAGTCATTAGAATGCCCCATCATCACAGTAATAATCATCATTCAGGGCAATCTTCACCCGTTACTAACAGTCTTGTGAGTGTTGGAAGGTGA	2112	0.4621	MMMLFFFIYYSFITHKLKIAFFQVSIFTHQTMFGNHHFLLFIFFTTFSFFSPNHSLFFNITNFDDPTTSSDISYQGDGRSTNGSIDLNKVSYYFRVGRALYSKPLHLWDPSSNVVTDFVTRFTFSIDRVNNSETFYADGFAFYLAPLGYQIPPNSAGGTFALFNATTNSDLPENHVFAVEFDTFIGSTDPPMKHVGVDDNSLTSVAFANFDIDKNLGKKCHALITYTASSQTLFVAWSFKGIPTAKDNDNNSSLSYQVDLKKILPEWVNIGFSASTGLYTEHNVIYSWEFNSTLKDSSVDNGVKLNHKGSKVVLIVAVLCPLVLLFVAASVFVFVLIRKKRRMDDCMLYDAGDDEVGPTSVKFDLDRGTIPRRFEYKELVDATNGFSDERRLGQGASGQVYKGVLSYLGRVVAVKRIFADFENSERVFINEVRIISRLIHKNLVQFIGWCHEEGEFLLVFEYMQNGSLDSHLFGNKRMLQWRARYKIALGVATALHYLHEDAEQCVLHRDIKSANVLLDMEFNTKVGDFGMAKLVDPRLRTQRTGVVGTYGYLAPEYVNVGRASRESDMYSFGVVALEIASGRRTYQDGEFHVSLMNWVWQLYVEGEILRAADEKLCEEFDENEMRSLLVVGLWCTNPNDKERPKAAQVIKVLQLEAPLPFLPLDMYERAPPMQVIRMPHHHSNNHHSGQSSPVTNSLVSVGR	703

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun8g00684	703	FunFam	L-type lectin-domain containing receptor kinase IX.1	371	462	-	-
	Viun8g00684	703	Pfam	Legume lectin domain	57	298	IPR001220	GO:0030246
	Viun8g00684	703	MobiDBLite	consensus disorder prediction	685	703	-	-
	Viun8g00684	703	PANTHER	-	80	658	-	-
	Viun8g00684	703	SUPERFAMILY	Concanavalin A-like lectins/glucanases	55	294	IPR013320	-
	Viun8g00684	703	Gene3D	Phosphorylase Kinase; domain 1	371	462	-	-
	Viun8g00684	703	FunFam	L-type lectin-domain containing receptor kinase IX.1	463	663	-	-
	Viun8g00684	703	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	506	518	IPR008271	GO:0004672\|GO:0006468
	Viun8g00684	703	ProSiteProfiles	Protein kinase domain profile.	386	662	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun8g00684	703	SMART	serkin_6	386	662	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun8g00684	703	ProSitePatterns	Protein kinases ATP-binding region signature.	392	415	IPR017441	GO:0005524
	Viun8g00684	703	SUPERFAMILY	Protein kinase-like (PK-like)	370	673	IPR011009	-
	Viun8g00684	703	MobiDBLite	consensus disorder prediction	678	703	-	-
	Viun8g00684	703	CDD	lectin_legume_LecRK_Arcelin_ConA	58	294	IPR001220	GO:0030246
	Viun8g00684	703	ProSitePatterns	Legume lectins alpha-chain signature.	264	273	IPR000985	-
	Viun8g00684	703	Gene3D	Transferase(Phosphotransferase) domain 1	463	657	-	-
	Viun8g00684	703	Gene3D	-	54	306	-	-
	Viun8g00684	703	Pfam	Protein kinase domain	387	651	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun8g00684	Viun-Chr8	5477637	5480059	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun8g00684	38	666	Receptor kinase-like Gene Family	AT5G10530	45.141	2.92e-180	526

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Viun8g00684		Pkinase	1.9e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun8g00684	-		-	vun:114193012	1387.86