Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00680 ATGGAGGAGATGTCATTTGTGGTTGCAGTGCCATTAAGAGTAGGTAATTGTTGTTCAGTCTGTGATAACCCAACCATAGTTCCCCACATGGATGTGTCCAGGTTTAAGCTGATGGCGGATACAGGGTTGTTATCTAATTCTGTAACTAAGGTTTTCACCGAGACAGTTGCAGGTTCCGATGATTGTGATGATAGTGGCAATTTAGAGGATGAAGCTGGTATTACTGAGGTTATACCACCAAAACAGGATAGAGAAGGAGAGAGTCCTATGTTAGATATGATATCCCAAAATAGAAGCACTTTGGTTGCTAATGATGAAGTGTTAGCCGATGAAATTGAGGAGGATTCATTGTCATTGGAAGGTGACCAGGTTGTTGATAGCTCATGTTCTCTTTCGGCGGTCAGTGAGAACAGTAGTGTGTGTGGAGAGGAGTCCTTGTGTTTCGATGCTACTTCAGATGTTGGGACACCATGTTCTGCTTATGTAGATAAGAGCATTGGTGCTGTCAATATTGCTGCCGAGGCAGTTGATTTGGAGGAATCAAATGTTGACACAGATATTACAACAGAACCTCTTACTGCGGCGGCAGTGACCCTTGAAGAAGAAAACGGAATTACAACTGGCCCTAAGCCTTCTGATGTTGTTCTTCATCAGTTGCCTCATGAAAAGGGGGTGAGTGGAATGGTTGGTCGGAGTGTTTTTGAATTGGATTATACCCCACTTTATGGATTCATATCTGTGTGTGGAAGAAGACCTGAGATGGAAGATGCACTTGCAACTGTACCTCGATTTTTGAAAATTCCTATTCAGATGCTAATTGGTGATCGGGTGCTTGATGGAATAAACAAGGGTTTTAGTCAGCAGACGACTCATTTCTTTGGAGTCTATGATGGCCATGGTGGCTCTCAGGTTGCAAAGTATTGTCAAGATCGTATCCACAAGGCTTTGGCTGAGGAAATAGAATTTTTCAAGGAAGCTCAAATCAGTGGAAGTATGAAGGAAAGTTGTCAAGATCAGTGGAAAAAAGCTTTAACCAATTGTTTCATAAAGGTTGATGCTGAAGTTGGAGGGAAAGTTGATAATGAACCTGTTGCCCCAGAAACTGTTGGTTCCACTGCTGTTGTTGCTGTTATTTGTTCATCTCATATCATAATTGCAAATTGTGGTGATTCAAGAGTGGTTCTATGTCGTGGAAAAGAACCCATTGCATTATCGGTGGACCATAAACCTAACCGACCTGATGAATATGCAAGAATTGAGGCAGCTGGAGGAAAAGTGATTCAATGGAATGGTCATCGTGTATTTGGTGTTCTTGCAATGTCAAGGTCTATCGGTGATAGATATTTGAAGCCATGGATTATTCCAGAACCAGAAGTTAAGTTTCTTCCCCGCACAAAAGACGACGAGTGTCTCATTCTGGCCAGTGATGGTCTGTGGGATGTTATGACGAACGAAGAGGTGTGTGACCTCGCCCGGCGACGGATAGTTCTCTGGTACAAGAAAAATGGCTTGGAACAACCCTCATCAGAAAGGGGAGAGGGAGTTGATCCTGCTGCACAAGCAGCAGCAGAATACCTATCAAACCGGGCACTTCAGAAAGGAAGCAAAGATAACATCACTGTGATTGTGATTGATTTGAAACCCCAAAGGAAATATAAGAGCAAGTCATGA 1671 0.4291 MEEMSFVVAVPLRVGNCCSVCDNPTIVPHMDVSRFKLMADTGLLSNSVTKVFTETVAGSDDCDDSGNLEDEAGITEVIPPKQDREGESPMLDMISQNRSTLVANDEVLADEIEEDSLSLEGDQVVDSSCSLSAVSENSSVCGEESLCFDATSDVGTPCSAYVDKSIGAVNIAAEAVDLEESNVDTDITTEPLTAAAVTLEEENGITTGPKPSDVVLHQLPHEKGVSGMVGRSVFELDYTPLYGFISVCGRRPEMEDALATVPRFLKIPIQMLIGDRVLDGINKGFSQQTTHFFGVYDGHGGSQVAKYCQDRIHKALAEEIEFFKEAQISGSMKESCQDQWKKALTNCFIKVDAEVGGKVDNEPVAPETVGSTAVVAVICSSHIIIANCGDSRVVLCRGKEPIALSVDHKPNRPDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVKFLPRTKDDECLILASDGLWDVMTNEEVCDLARRRIVLWYKKNGLEQPSSERGEGVDPAAQAAAEYLSNRALQKGSKDNITVIVIDLKPQRKYKSKS 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00680 556 Pfam Protein phosphatase 2C 277 539 IPR001932 -
Viun8g00680 556 CDD PP2Cc 242 546 IPR001932 -
Viun8g00680 556 FunFam Protein phosphatase 2C 16 229 556 - -
Viun8g00680 556 SMART PP2C_4 229 544 IPR001932 -
Viun8g00680 556 SUPERFAMILY PP2C-like 234 548 IPR036457 -
Viun8g00680 556 ProSitePatterns PPM-type phosphatase domain signature. 292 300 IPR000222 GO:0043169
Viun8g00680 556 ProSiteProfiles PPM-type phosphatase domain profile. 241 546 IPR001932 -
Viun8g00680 556 PANTHER PROTEIN PHOSPHATASE 189 546 IPR015655 GO:0004722|GO:0006470
Viun8g00680 556 Gene3D - 228 556 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00680 Viun-Chr8 5469336 5474296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00680 1 556 PP2C-type Phosphatase Gene Family AT1G17550 46.303 2.13e-158 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00680 K14497 - gmx:100805281 966.452