Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00678 ATGTCGTCGGTTTACGTTCTAGAACCTCCAACAAAGGGGAAAGTGGTAGTGAGCACCACGCGCGGACCATTGGACATCGAGCTATGGCCGAAGGAGGCTCCAAAAGCCGTGAGGAACTTCGTGCAGCTCTGCCTCGAAAACTATTACGACAACACTATCTTCCACCGCGTCATCAAGGACTTCCTCGTCCAAGCTGGCGACCCTTCCGGCTCCGGCACCGGAGGTGAAAGCATTTATGGTGGTGTTTTTGCTGATGAGTTTCATTCTCGTTTAAAATTCAAGCACAGAGGAATAGTTGCGATGGCAAGTGCTGGATCTCCAAATTCCAATGGAAGTCAGTTTTTCATCACCCTCGATCGTTGTGACTGGCTTGACCGCAAGCATACCATTTTTGGAAAAGTGACAGGAGATACAATGTATAATCTTTTGAGACTGGGTGAAGTTGAAACTGATAAGAATGACAGGCCTTTAGATCCGCCAAAGATTTTATCAGTTGAGGTGTTATGGAATCCATTTGAAGATATTGTTCCAAGAACACTTCAGAAATCTCGGACTGAAGCTAGAGTTGATACTGAAAGTAAAGAGCCAAAGAAGAAAGGTGTAAAAAAATTGAACTTGCTTTCATTTGGGGAAGAAGCTGAAGAAGAGGAAAAGGAATTGGTGTTGGTGAAGCAAAAGATCAAGAGCAGTCACGATGTCTTGAATGATCCTCGTCTTCTAAAGGAAGAAACACCTGATAGTGAATTGAGTTCGTCAAGAAGAGATCTGCAGTTGTCTGTTAGGGAGACACTTAATGCAAAGAAAGAAGAGCCTCAGAAAGATTCAGCACCTGGTAACGTTGCCCGTCTTGATTCAAGTGATGATGATGAAGCGGATTTTGATTCAAGAATGCGCATGCAGATACTAAAAAAGAGGAAGGAGTTGGGTGATCTCCCTCCTAAGCCTAAGTCGCAAAAAGCAGGAAGGTCCATTCCAGAGAATCATGATACTTCAGCACCAAGGTCCAATGCTGCCAGTGTTGATGAGGATCAACCAAAGGTGGAAAAGTTGTCCATGAAGAAAAAGGGAGTGGGATCTGAAGCAAGAGCTGAACGAATGGCTAATGCAGATGCAGATCTGCAACTATTAAATGAAACTGAGAGAGGAAGACAATTGCAGAAGCAGAAGAAACGCCGACTTCAAGGGCGCGAAGATGAAGTTCTGGCTAAACTTCAAAAGTTTAAGAATTCTTATGCAGCAAAGGAGACACCCCCAAGCGAATCTGAAGATGTTAAAAATGAGGATTTGTCTGACTGGAGAGGTGTCAGTTTAAAATTTGCCCCCGAGTCTGGCAAGGACCGCATGTCACGTAATGAGGACCCAAATGACTATGTTGTGCACGACCCACTTCTGGAAAAGGGAAAAGAAAAGTTTAATAGGATGATTGCCAAACAAAAGAGACGAGAACGAGAGTGGGCTGGGAGGTCTCTTACTTGA 1476 0.4431 MSSVYVLEPPTKGKVVVSTTRGPLDIELWPKEAPKAVRNFVQLCLENYYDNTIFHRVIKDFLVQAGDPSGSGTGGESIYGGVFADEFHSRLKFKHRGIVAMASAGSPNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEVETDKNDRPLDPPKILSVEVLWNPFEDIVPRTLQKSRTEARVDTESKEPKKKGVKKLNLLSFGEEAEEEEKELVLVKQKIKSSHDVLNDPRLLKEETPDSELSSSRRDLQLSVRETLNAKKEEPQKDSAPGNVARLDSSDDDEADFDSRMRMQILKKRKELGDLPPKPKSQKAGRSIPENHDTSAPRSNAASVDEDQPKVEKLSMKKKGVGSEARAERMANADADLQLLNETERGRQLQKQKKRRLQGREDEVLAKLQKFKNSYAAKETPPSESEDVKNEDLSDWRGVSLKFAPESGKDRMSRNEDPNDYVVHDPLLEKGKEKFNRMIAKQKRREREWAGRSLT 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00678 491 MobiDBLite consensus disorder prediction 260 275 - -
Viun8g00678 491 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 179 - -
Viun8g00678 491 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 167 IPR002130 GO:0000413|GO:0003755
Viun8g00678 491 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 167 IPR002130 GO:0000413|GO:0003755
Viun8g00678 491 MobiDBLite consensus disorder prediction 324 338 - -
Viun8g00678 491 CDD cyclophilin_CeCYP16-like 8 179 - -
Viun8g00678 491 SUPERFAMILY Cyclophilin-like 14 184 IPR029000 -
Viun8g00678 491 Gene3D - 2 182 IPR029000 -
Viun8g00678 491 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 218 IPR044666 -
Viun8g00678 491 MobiDBLite consensus disorder prediction 283 313 - -
Viun8g00678 491 MobiDBLite consensus disorder prediction 238 428 - -
Viun8g00678 491 MobiDBLite consensus disorder prediction 341 367 - -
Viun8g00678 491 MobiDBLite consensus disorder prediction 443 463 - -
Viun8g00678 491 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Viun8g00678 491 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Viun8g00678 491 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Viun8g00678 491 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Viun8g00678 491 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Viun8g00678 491 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00678 Viun-Chr8 5437293 5444430 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00678 9 172 U-box Gene Family AT5G67530 45.732 2.46e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00678 K12737 - gmx:100793148 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00678 8 5437293 5444430 Viun8g00678 8 5437293 5444430 ECH