Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00676 ATGTCTTCTAATGGCGACACCAGCACGTCGCAGCTCTTAAATGTCACCATGGTCGCCGTTGACAAAGGCAAGAGCAGTGGCCACGCTTTTCGTTGGACCATCAAAAACATAGACAACCCTGTCATCATCGCACTCCATATCAAGCACAAAAACATTACTAATCAGAGCACCGATGTTGTACCTCCCGACGAAGAGGATGTAGCAAATGTTTTCAACAACTTTCGTCAAATGTGTCAAGGGAACAATGTTCAGTTGAAAGAAGCGGTGATCCATGACGGTGATATTGTGAGAGGAATAGTGGAATATGCACAGAGAAATCGCGTGAATACTATCGTCGTTGGTGCAGGCTCCTCCAACAAGAGTAGCTTTGCAAGGAGTCTTTACCTGAGGAGTGGAAGCAAAAAATTAAAAGGCCCTGTGTCAACAGGCGTAATGAAATCAGCACCAGATCATAGCTCAGTGTTTGTGATCTCAAAAGGAAAGATAGTGGGAGCTCGACCAGCAATACGACCAATGGTAAACATGGTTCAAGCACCAAGTGAACATGCAATAAGAAGTCAAAATGCAATACGAAGTGAAAATGCAATAAGTGAGAACAGGACACATGCAATTAAAAGTGGGAGCATCAATGGAAGATCAGAAAGATCACTTCTACTTGAAATGCCAAGGTCTTCTTCAGTTGGTCAATCAATGGAACACAGGTTAATATTTTGTCGTAGCTCGGATGGAAGTGACTCATCAACGTCGAACAAGATAGTGTCATCAGAAGGAAATAAACAAGAGTCTGATCTATCAGATTCTCAATTCACAGAAGAGATGGAGAATGAGATGAAAAGGTTGAAGCTCAAACTGAAGCAAACTATGGATATGTACGGTTCAGCCTGCAAAGAAGCAATGTCAGCCGAAAGCAAGGCTAAGGAGATTAACCAACGGAAACTGGACGAGGAACGTATGGCTGAGGTGGCTAAGTTGTCTAAAGAGGCAGCACTTGCATTGGCAGAAAAGGAGAAATTTAAAGCCAAAGCTGCCTTGGAAGCAGCCGAGGAAGCCATTAAGATGGTTGAAAAGGAAGCACAGAGAAGATTTCATGCAGAGATGAAGGCCAGAAGAGAGGCACATGAAAAGGATCGAGCATTGAATCAGTTGGCATGCAAGGATATTCGATGCAGAAAATACAGTATAACCGATGTTGAAGACGCCACTCAAAAGTTCTCCCCAGCTTTGAAAGTAGGCGAAGGTGGATATGGACCTGTCTTTAAAGGCCAACTTGATCACACCCCAGTAGCAATCAAAATTCTGAACCCTGAAGCTACCCATGGAAGGAGGCAATTCCAACAAGAGGTTGAGGTATTATGCAGCATAAGACATCCTAACATGGTTCTCCTAATTGGTGCATGTCCTGAGTACGGATGTTTAGTGTATGAGTACTTAGAGAATGGTAGCTTAGAAGATAGATTACTGAGGAAAAATGATAGTCCTCCAATTCCATGGTGGAAACGTTTTGAAATAGCTGCTGAGATTGCAACTGCACTGCTTTTCCTTCACCAAACAAAGCCAGAACCAATTGTGCACAGGGACCTCAAACCTGCCAACATTCTCTTGGACAGGAATTTTGTGAGCAAAATCAGCGATGTGGGTCTTGCAAGACTAGTGCCAGCTTCTGTGGCCGATTCTGTCACACAATATCACTTGACTGCTGCTGCTGGAACCTTTTGTTACATTGACCCTGAGTACCAACAAACTGGGATGCTAACAACAAAATCAGACGTATACTCATTGGGGATAATGCTTCTGCAAATCATCACAGCCAAGGCTCCAATGGGGCTTGCTCACCACGTTCTGATGGCCATTGAAGATGGAACATTTTCAGAAATGCTTGATCCTTCGATCAGTGATTGGCCCCTCGAAAAGACTCTTGAATTTGCCAAACTCTCGTTGGGTTGTGCAGAGCTCAGCAAAAAGGATAGGCCTGATCTTGCAACTGTAGTTGTGCCAAAGCTTAATCAGTTGAGAGACTTTGGGTTAGCATCACATAACAAGCTGAATCCTAGTCTCCCTCAACGCCCTCTCTCTCCTACAAGAACTCATCGATCAGATCCATAA 2103 0.4389 MSSNGDTSTSQLLNVTMVAVDKGKSSGHAFRWTIKNIDNPVIIALHIKHKNITNQSTDVVPPDEEDVANVFNNFRQMCQGNNVQLKEAVIHDGDIVRGIVEYAQRNRVNTIVVGAGSSNKSSFARSLYLRSGSKKLKGPVSTGVMKSAPDHSSVFVISKGKIVGARPAIRPMVNMVQAPSEHAIRSQNAIRSENAISENRTHAIKSGSINGRSERSLLLEMPRSSSVGQSMEHRLIFCRSSDGSDSSTSNKIVSSEGNKQESDLSDSQFTEEMENEMKRLKLKLKQTMDMYGSACKEAMSAESKAKEINQRKLDEERMAEVAKLSKEAALALAEKEKFKAKAALEAAEEAIKMVEKEAQRRFHAEMKARREAHEKDRALNQLACKDIRCRKYSITDVEDATQKFSPALKVGEGGYGPVFKGQLDHTPVAIKILNPEATHGRRQFQQEVEVLCSIRHPNMVLLIGACPEYGCLVYEYLENGSLEDRLLRKNDSPPIPWWKRFEIAAEIATALLFLHQTKPEPIVHRDLKPANILLDRNFVSKISDVGLARLVPASVADSVTQYHLTAAAGTFCYIDPEYQQTGMLTTKSDVYSLGIMLLQIITAKAPMGLAHHVLMAIEDGTFSEMLDPSISDWPLEKTLEFAKLSLGCAELSKKDRPDLATVVVPKLNQLRDFGLASHNKLNPSLPQRPLSPTRTHRSDP 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00676 700 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 118 - -
Viun8g00676 700 Pfam Universal stress protein family 17 149 IPR006016 -
Viun8g00676 700 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 377 476 - -
Viun8g00676 700 MobiDBLite consensus disorder prediction 678 700 - -
Viun8g00676 700 Coils Coil 321 357 - -
Viun8g00676 700 Pfam Protein tyrosine and serine/threonine kinase 409 663 IPR001245 GO:0004672|GO:0006468
Viun8g00676 700 Gene3D HUPs 5 159 IPR014729 -
Viun8g00676 700 MobiDBLite consensus disorder prediction 240 264 - -
Viun8g00676 700 Coils Coil 270 290 - -
Viun8g00676 700 Gene3D Transferase(Phosphotransferase) domain 1 477 680 - -
Viun8g00676 700 MobiDBLite consensus disorder prediction 238 269 - -
Viun8g00676 700 ProSiteProfiles Protein kinase domain profile. 404 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00676 700 Gene3D Phosphorylase Kinase; domain 1 381 476 - -
Viun8g00676 700 SMART serkin_6 404 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00676 700 PANTHER OS02G0152300 PROTEIN 16 680 - -
Viun8g00676 700 SUPERFAMILY Protein kinase-like (PK-like) 387 663 IPR011009 -
Viun8g00676 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00676 Viun-Chr8 5427515 5431207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00676 85 674 Receptor kinase-like Gene Family AT5G12000 55.878 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Viun8g00676 PK_Tyr_Ser-Thr 9.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00676 - - var:108336981 1196.8