Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00662 ATGGTGAAACCGGCCATGACCAGAGTTGATTCTTCTTCTTCTTCCTCTTCTTCTCCCACTTCTTGCAATGAATCATTCTCCACCACTACCTGCAAGATGTACAAGGGAGTGAGGAAGAGAAAATGGGGGAAATGGGTCTCTGAAATTCGGCTTCCCAATAGCCGTGAGCGTATATGGTTGGGCTCTTACGACACGCAAGAGAAAGCAGCACGAGCCTTTGATGCTGCTCTCTATTGCCTGCGTGGGAAGGGTGCGAGCTTCAACTTCCCCGACACGCCTCGTCTCTTGGAAATGGACTCGCTCAAGATACCGTGCAGCCACCAAGAGATTCAGGAGGCGGCGGCGAAGTTTGCAAACAAGGTGGTGGAGATTTTCGCAGAAGAAGATGGAGAAGTTGGAGTTCAGAGTGAGTCTATGTCTGACCACACCACAGACACGAACACGAACACGGAGTTTCCTATTTATGGTGGGACAAACCATGATGTCCAAGTGGACCAAGACACCATGGATTGGACATTTATGAACATGTTGGATGACTTGAATGGCTCGGATTTTGGCCTCTATTTTGAAGCGGAGAAGGGTGAGTTTTCGTGCCCCACAACACACACTCCACTACTCTTTCACAATGGAGATGAGGTTGAAGTTGATGATCATGATCATGATGCTTTTTCTAACCACTCTTTTCTTTGGAGTTGGAACTTTTGA 705 0.478 MVKPAMTRVDSSSSSSSSPTSCNESFSTTTCKMYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGKGASFNFPDTPRLLEMDSLKIPCSHQEIQEAAAKFANKVVEIFAEEDGEVGVQSESMSDHTTDTNTNTEFPIYGGTNHDVQVDQDTMDWTFMNMLDDLNGSDFGLYFEAEKGEFSCPTTHTPLLFHNGDEVEVDDHDHDAFSNHSFLWSWNF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00662 234 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Viun8g00662 234 MobiDBLite consensus disorder prediction 1 26 - -
Viun8g00662 234 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Viun8g00662 234 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Viun8g00662 234 MobiDBLite consensus disorder prediction 7 26 - -
Viun8g00662 234 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 184 - -
Viun8g00662 234 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
Viun8g00662 234 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Viun8g00662 234 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Viun8g00662 234 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Viun8g00662 234 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Viun8g00662 234 FunFam Ethylene-responsive transcription factor 2 32 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00662 Viun-Chr8 5269916 5270790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00662 24 159 AP2-EREBP Transcription Factor Family AT1G19210 56.028 2.44e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun8g00662 AP2 6.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00662 - - vum:124843463 416.001