Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00649 ATGGTTTGTGAGATGGAAAGTGATTGTATTGAAGACATGGACGTTGAAGTCCTCTCTTCAATGTGGCCAGAAGATATTGGCTCTGATGTTGGAAAACAGTTCAATATAGAGAAGCCTGGAAGGGACCAAGATATGTTGGAGGAAGTAACAATCTTAGAGGAGCCAACTATAGCTGATTTTCAGCGTCTCATGGAGCTTACAAATTACACAGATAAAGGGTCTTCTCAGCTGGCATATCTCATGCAACACTGGGAGTATAAGCAGGCTAATGCAGTTCGGCTTCTCAGAGAGGAACTCGACAACCTTAGCAAACAAAGACAGGAAGTTGAGCTCAGAAAATTGGAGATACTGAAAGACAATCGGTTTGAGGAAGAGAATTATGGAGGTGACAAACGACCAGTTTCTATATTGGATGAGATTTACTACACATGGCAAGATGTTCCAGTGCCACTCAGGAAAAGTGATGTGGTTGTGCAGAACAAGAGGATTGAGATTGATGCTGAGTATGACACTGTTGTGTATTGGAAACAGCGGGCACTGCAGTTGGAAAAACAGTTGGAGGCAAGTGTCAACAGAGAGCAGATACTAACAGACAAGTTGCAAGAAAGTATAAAGAATTTTGAAAGGCAATCTTCACCAGTGGAAGAACTAACTCAGATTCTGAAGAGAGCAGATAATTTCTTACATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGATATCGCTTTATCTACAATCATTTTCCAAGTTTACAAGAGGAGGACATCATAGGAAAAACTGATGTTGAAATTTTCACTGGATCCGGTGTTAAGGAGTCTCAAGATTTCAAGAGGGAAGTGATGGAGAAAGGGTTGCCTGCAAAGAAGGAAATTACTTTTGAGACAGAACTATTTGGGTCAAAGACATTTTTGATATATGTAGAACCTGTCTTTAGCAAAGCAGGGGAGACAATTGGAATAAATTATATGGGAATGGAAATAACAGATCAGGTAAGAAAAAGAGAAAGAATGGCAAAGCTTAGGGAAGAGATTGCAGTGCAGAAAGCCAAAGAAACAGAACTTAATAAAACCATTCACATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTATCTGGAGTTGTTAGCATGGCTGAAATTCTTTCCACCACGAAACTTGATCGGGAACAAAGACAGCTTTTGAATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATTCTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAATTGGAAGCAACCAAATTCCGGCCAAGAGAGGTGGTAAAACATGTACTCCAGACTGCTGCAGCATCACTGCAGAAAATGTTAACCTTAGAAGGAAATGTAGCAGATGATATACCTATTGAGGTCATTGGAGATGTTTTGAGGATTCGGCAGATCCTCACAAATTTAGTCAGCAATGCTGTGAAGTTTACACATGAAGGCAAAGTTGGTATCAACCTTTACGTTGTTTCAGAGCCACCTTTTGCCAAAGCAGAAGGCCATCAAAAGATGGCCATAGATCAGTCTACAAATTCAGCAAATGGAGTGAAGGAAGAGAACTATGCATCAACACCACGAAGCAGCAGTGATAAAAATGGTCTTGATGGTCAGAAACACAACGACCATCCTAGCCAAAATCATTTATTCAACGATGAATGTAGATCTTCAGTTAAAAGTGAATGCTCAATGAATGGAGATACTGAGGAGCAAACTCATTCTACTGAAACAACAGTGTGGATACGTTGTGATGTGTATGACACAGGAATTGGAATACCAGAAAAGGCAATACCTAATTTATTTAGAAGGTACATGCAAGTAAGTGCAGACCATGCTCGAAAATATGGTGGCACAGGTCTGGGACTGGCAATATGCAAACAACTGGTTGAGTTAATGGGGGGTCATTTAACAGTATCTAGCAAAGAACATTGTGGTTCTACCTTCACATTCATTCTTCCCTACAAAGTTTCAACGGGTTGTGATAATTCTGATGACCCAGATGAACTTTCAGATGTGGATGATAATGAGGATGATACCACAGAGGGGTTCTTCCAATTCCAACCACGCACGCTAGGCTCTCTCTTCTCTTCTAATGGACCTACCAGGCCCCAAAATATACTACCAGGTTTCAGAAGCTCAAACAAGTTCAATGGATTTTCAGAGAATTCTTACTCATTCCCCACTACAGACATAAAATCAAAAGGGACCAGTTCAACTGAGGATGCATCTTCAGTTGTTGTTGATGCTCCTGAGATGTATGAATCAACAAGTTCATCAAACCATAGCCCTCAAACGAAGAATGAAAGTGCAGTTAACACCAACCAACAGAATCAAGATAAGGTACATGCTCGGTTACAGAATGGTAGTGTAGACTCTTCTCAACATAAGGAGGCAATCACACTAGGAACAATGTCAAATGAACTCCAACAAACATGTGTCGTTAGTAGTAACAATAACACTTCATCAGAAGAAATCAAATCCTCATCAGGGCCTAAGATTCTTCTTGTTGAAGATAACAAGATCAATGTCATGGTGACACAGTCAATGATGAAGAGGTTAGGCTATAGCATGGATGTTGTGAACAATGGAGTGGAAGCTGTACGTGCAGTTCAACGCCATACTTATGATGTCATTTTGATGGATGTGTTCATGCCAGTTATGAATGGTCTTCAAACAACAAAACTGATTCGGTCTTATGAGGAAACTGGCAATTGGGATGCTGCAAGAAAAGCTGGAATTGAACAATGCTTACCAATTTCACATGAATGTTCTGCACCACCTAAAAACCGGATCCACATTGTTGCGATGACAGCAAACACAATGTCGGAGAGTGCTGAGGAGTGTTATGCAAATGGTATGGACTCGTTTGTGTCAAAACCTGTTACATTCCAAAAATTGAAAGACTGTCTAGAACAGTATCTGAGGTGA 3003 0.4029 MVCEMESDCIEDMDVEVLSSMWPEDIGSDVGKQFNIEKPGRDQDMLEEVTILEEPTIADFQRLMELTNYTDKGSSQLAYLMQHWEYKQANAVRLLREELDNLSKQRQEVELRKLEILKDNRFEEENYGGDKRPVSILDEIYYTWQDVPVPLRKSDVVVQNKRIEIDAEYDTVVYWKQRALQLEKQLEASVNREQILTDKLQESIKNFERQSSPVEELTQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGLPAKKEITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLNVMISSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGNVADDIPIEVIGDVLRIRQILTNLVSNAVKFTHEGKVGINLYVVSEPPFAKAEGHQKMAIDQSTNSANGVKEENYASTPRSSSDKNGLDGQKHNDHPSQNHLFNDECRSSVKSECSMNGDTEEQTHSTETTVWIRCDVYDTGIGIPEKAIPNLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGHLTVSSKEHCGSTFTFILPYKVSTGCDNSDDPDELSDVDDNEDDTTEGFFQFQPRTLGSLFSSNGPTRPQNILPGFRSSNKFNGFSENSYSFPTTDIKSKGTSSTEDASSVVVDAPEMYESTSSSNHSPQTKNESAVNTNQQNQDKVHARLQNGSVDSSQHKEAITLGTMSNELQQTCVVSSNNNTSSEEIKSSSGPKILLVEDNKINVMVTQSMMKRLGYSMDVVNNGVEAVRAVQRHTYDVILMDVFMPVMNGLQTTKLIRSYEETGNWDAARKAGIEQCLPISHECSAPPKNRIHIVAMTANTMSESAEECYANGMDSFVSKPVTFQKLKDCLEQYLR 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00649 1000 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 372 438 IPR036097 GO:0000155|GO:0007165
Viun8g00649 1000 SMART HisKA_10 373 438 IPR003661 GO:0000155|GO:0007165
Viun8g00649 1000 MobiDBLite consensus disorder prediction 778 802 - -
Viun8g00649 1000 Coils Coil 92 119 - -
Viun8g00649 1000 MobiDBLite consensus disorder prediction 689 705 - -
Viun8g00649 1000 ProSiteProfiles Response regulatory domain profile. 857 999 IPR001789 GO:0000160
Viun8g00649 1000 FunFam Histidine kinase 5 850 1000 - -
Viun8g00649 1000 SMART HKATPase_4 484 681 IPR003594 -
Viun8g00649 1000 MobiDBLite consensus disorder prediction 687 706 - -
Viun8g00649 1000 FunFam Histidine kinase 5 215 350 - -
Viun8g00649 1000 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 427 679 IPR036890 -
Viun8g00649 1000 MobiDBLite consensus disorder prediction 530 557 - -
Viun8g00649 1000 Coils Coil 344 364 - -
Viun8g00649 1000 Gene3D - 850 1000 - -
Viun8g00649 1000 SUPERFAMILY CheY-like 854 1000 IPR011006 -
Viun8g00649 1000 Pfam His Kinase A (phospho-acceptor) domain 375 438 IPR003661 GO:0000155|GO:0007165
Viun8g00649 1000 Gene3D - 361 438 - -
Viun8g00649 1000 SMART REC_2 856 995 IPR001789 GO:0000160
Viun8g00649 1000 Gene3D - 439 685 IPR036890 -
Viun8g00649 1000 ProSiteProfiles Histidine kinase domain profile. 380 681 IPR005467 -
Viun8g00649 1000 Coils Coil 190 210 - -
Viun8g00649 1000 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 484 679 IPR003594 -
Viun8g00649 1000 CDD HATPase_EvgS-ArcB-TorS-like 489 678 - -
Viun8g00649 1000 Pfam Response regulator receiver domain 858 926 IPR001789 GO:0000160
Viun8g00649 1000 FunFam Probable histidine kinase 1 571 684 - -
Viun8g00649 1000 PRINTS Bacterial sensor protein C-terminal signature 606 620 IPR004358 GO:0016310|GO:0016772
Viun8g00649 1000 PRINTS Bacterial sensor protein C-terminal signature 665 678 IPR004358 GO:0016310|GO:0016772
Viun8g00649 1000 PRINTS Bacterial sensor protein C-terminal signature 641 659 IPR004358 GO:0016310|GO:0016772
Viun8g00649 1000 FunFam Putative histidine kinase 5 361 438 - -
Viun8g00649 1000 MobiDBLite consensus disorder prediction 526 576 - -
Viun8g00649 1000 CDD HisKA 372 434 IPR003661 GO:0000155|GO:0007165
Viun8g00649 1000 MobiDBLite consensus disorder prediction 558 574 - -
Viun8g00649 1000 CDD REC_hyHK_CKI1_RcsC-like 858 995 - -
Viun8g00649 1000 Gene3D PAS domain 214 350 - -
Viun8g00649 1000 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 13 999 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00649 Viun-Chr8 5066347 5073879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00649 1 999 Histidine Kinase Gene Family AT5G10720 58.549 0.0 1119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun8g00649 HATPase_c 1.1e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00649 - - gmx:100796072 1800.02