Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00647 ATGGGGTACCTCAATTCAGTTTTATCCTCTTCAGGTCAGGTTCATGCCGCAGAAGATTCACCTGTCAGTGGAGGGGGCCTCAGTCAGAATGGCAAATTCAGCTATGGGTATGCTAGCTTCCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAAAATTGATGGCGTTGATGGTGAAATTGTTGGCCTTTTTGGAGTTTTTGATGGTCATGGAGGTGCTCGTGCTGCCGAGTATGTCAAGCAAAACCTGTTTAGCAATTTGATCAGACATCCAAAATTCATTTCTGATACCAAATCTGCAATAGCTGATGCATATAACCATACCGACTCTGAATTTCTGAAATCTGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATTCTTGTCGGAGACCGCTTGCTTGTTGCAAATGTTGGGGATTCCAGAGCTGTTATATGCAGGGGTGGAAATGCCATTGCTGTTTCCCGAGATCACAAGCCAGATCAAACTGATGAGAGGCGAAGGATTGAAGATGCAGGTGGCTTTGTCATGTGGGCTGGAACTTGGAGAGTTGGTGGCGTTCTTGCTGTTTCTCGTGCATTTGGCGATAGACTCCTCAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGGAAGAAAAGGTTGATAGCTCTCTTGAGTTTCTCATATTGGCCAGTGATGGGCTATGGGATGTTGTCTCAAACGAGGAAGCTGTTTCCATGATTAAACCGATTCAGGACGCGGAGGAGGCAGCAAAGAGACTGATGCAAGAAGCATACCAGAGAGGTAGTTCTGACAACATTACATGCATCGTTGTTCGTTTCTTGTCGAACCAAGGTGCTTCTTCTCACAGTAACTCTGGCTAA 882 0.4501 MGYLNSVLSSSGQVHAAEDSPVSGGGLSQNGKFSYGYASFPGKRSSMEDFYETKIDGVDGEIVGLFGVFDGHGGARAAEYVKQNLFSNLIRHPKFISDTKSAIADAYNHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVSMIKPIQDAEEAAKRLMQEAYQRGSSDNITCIVVRFLSNQGASSHSNSG 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00647 293 SMART PP2C_4 24 278 IPR001932 -
Viun8g00647 293 FunFam probable protein phosphatase 2C 59 26 284 - -
Viun8g00647 293 Pfam Protein phosphatase 2C 61 273 IPR001932 -
Viun8g00647 293 CDD PP2Cc 33 280 IPR001932 -
Viun8g00647 293 SMART PP2C_SIG_2 28 280 IPR001932 -
Viun8g00647 293 PANTHER PROTEIN PHOSPHATASE 28 279 IPR015655 GO:0004722|GO:0006470
Viun8g00647 293 Gene3D - 26 286 IPR036457 -
Viun8g00647 293 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169
Viun8g00647 293 ProSiteProfiles PPM-type phosphatase domain profile. 34 280 IPR001932 -
Viun8g00647 293 SUPERFAMILY PP2C-like 28 280 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00647 Viun-Chr8 5030623 5034796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00647 1 292 PP2C-type Phosphatase Gene Family AT4G31750 89.726 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00647 K17506 - gmx:547661 570.466