Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00624 ATGCTCGTTCAAGTCCTCAACACAGCAGTCATAATGGACGAAAAGGTGGAAAGTCTTAAATCTGAGTTACAGAGAGTGAGAGAGGAGAATAACACTCTAAGAGTGATGTTTGAAGTTCTAAGCAGCAAGTACACAAAGCTTGAGTCCCATCTTCAAGAGATAAACAAGGAACAACACAAGGGCATGAATCAAATAGGATCAGTAACAGAACCTATCTTGGATGTGAACAAGAGACGGAGACTAGAGTTTCCCACAGCAAAAAAACCACTACAAATCTTTGTCAGAACACATCCCATGGATGATAGTTTGATTGTAAAAGATGGATATCAGTGGAGAAAGTATGGACAAAAGGTCACCAAAGACAATGCTTCACCAAGAGCTTACTTTAGGTGCTCCATGGCTCCCATTTGCCCAGCCAAAAAGAAGGTGCAAAGATGTTTACATGATAAGTCTATCCTTGTTGCAACTTATGATGGAGAGCACAACCATGGTGCTCTTCATGAGCCATCTTCATCCACACCTAGAGGCTCTTCAGTGGCCAATCAGTTGCCTAGCATAGCAAATGACAAAGAAGCAATGAACATTTTGGCTCTTTCTGCATTGTCTCAAACAGATAGAAGACACAGTGAAGAAGTAATGCATCAACATAACCATGAAACCAACGTCAAAGTTGAAGAATATGTAAGTTCTCTAATCAAAGATCCTGACTTCACCATGTCATTAGCTGAAGCAGTTGCTCGCACCATCACTGGGGAGCTCAAGCAGCAAGATCTAAACCTCAATTTGAATATTCCGGAAGAGTGA 804 0.4129 MLVQVLNTAVIMDEKVESLKSELQRVREENNTLRVMFEVLSSKYTKLESHLQEINKEQHKGMNQIGSVTEPILDVNKRRRLEFPTAKKPLQIFVRTHPMDDSLIVKDGYQWRKYGQKVTKDNASPRAYFRCSMAPICPAKKKVQRCLHDKSILVATYDGEHNHGALHEPSSSTPRGSSVANQLPSIANDKEAMNILALSALSQTDRRHSEEVMHQHNHETNVKVEEYVSSLIKDPDFTMSLAEAVARTITGELKQQDLNLNLNIPEE 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00624 267 SMART WRKY_cls 105 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun8g00624 267 SUPERFAMILY WRKY DNA-binding domain 99 164 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun8g00624 267 ProSiteProfiles WRKY domain profile. 100 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun8g00624 267 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 15 61 IPR044810 GO:0003700
Viun8g00624 267 Pfam WRKY DNA -binding domain 106 163 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun8g00624 267 Coils Coil 9 57 - -
Viun8g00624 267 Gene3D WRKY domain 91 165 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00624 Viun-Chr8 4776968 4778944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00624 1 257 WRKY Transcription Factor Family AT1G80840 35.034 8.09e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun8g00624 WRKY 2.6e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00624 - - gmx:100170679 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00624 8 4776968 4778944 Viun9g03160 9 39001383 39003143 PCT