Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00623 ATGCATTTCGCGTTGGTGGGGGGTTGTGTCTTTGATTACTGCTTTACCACGGATGTTATGGAAGAAGATGAATATAGAGTGTATCTAGGAGGAATAATTGGGCAACTTCGTGGTCACTTCCCCGATGCTTCATTCATGGTGTTCAACATGCGGGAAGGAGACAGCCAAAGCCAGATTTCAAACATTTTGTGTGACTATGATATGACTGTGATAGATTATCCTCGACAGTATGAAGGGTGCCCGTTGCTTACCATGGAGATGATCCATCATTTCTTGAGATCAGGTGAAAACTGGCTTCAACTTGGGCATCAAAATGTTGTCTTGATGCATTGTGAACGAGGTGGGTGGCCGTTACTAGCGTTTATGCTGGCTGCACTCTTGATTTATAGGAAGATGTTTACAGGGGAGCAGAAAACACTAGACATGATATATAAACAAGCTCCTCGGGAACTTCTGCAGTTGATGTCACCATTGAATCCTTTACCTTCACAATTGAGATATCTTCAGTACATATCAAGAAGAAATGTTGGTTCAGAATGGCCTCCTCTTGATAGGGCACTTACTTTGGACTGTGTAATTATAAGACTCATTCCTAACATGGGTGGAGAGGGTGGTTGCCGTCCTATATTTAGAATATATGGGCAAGACCCTTTTATTCCTGCAGATCGAACTCCCAAAGTTCTCTTTTCAACTCCAAAAAGGAGCAAACTTGTTCGCTACTGTAAGCAGACTGATTGTGAACTGGTTAAGATTGACATCCACTGTCATGTTCAAGGAGATGTCGTTTTTGAGTGTATTCATCTGCACAGTGATTTAGAGCATGAAGAAATGATGTTTCGGGTGATGTTTAATACAGCATTCATAAGATCAAATATTTTGATGCTTAACCGTGATGAAATCGACATACTATGGAATGCTAAAGATTGCTTCCCTAAGAATTTCAGAGTGGAGGTTCTTTTCTCAGATATGGATGCTTCATCTTCTGTTATTTCAATTGATCTGCCTCGTGTTGAGGAGAAAGATGGCCTCCCTGTTGAAGCATTTGCAAAGGTCAAGGAGATTTTCAGCAACGTGGATTGGCTAGATTCAAAGGAAGAAGTAGCAAGTGTGCTCCAACATATCACATCTTCAAATATCCTTCTGGAAAAATTCGACGCTGGGGTTTCTGCTGCAACTAGTGGCTTGCAAAGGGAGTCATCTGAAAATTCTGCAGCTGTTTTGAAGGCATACAGTGATCCAAACATTCAGACTTCTGCAGTTCAGGGGAAACATTCTACATCCTCATTGGGATCGTCTTTGGATTTTGCTTTGGGAAATAAGACCGAACCATTAGAGTCAAAGACATTGTCCGAAAATGACATGAAGACTCTAGAGTCATTAGCATCCACTGATGGAGATTCATTGGCAAAGAAGATTGATTTGTTAGGATCAAAGGAGAAAACAATTGATAACTCATCTGTTAGTGCTCCTATGGAAAAGAACAATGACTCTCTAGAACTGAAGGAATCACCAGAAAATAGCCTCAGGACTTCTGCTTCCACAAGTCAGGGGAAACAGCTTACTCCCTCATTAGATGAGGCCAAGGTTCCATATAAGGATGCATATTCAATGACACAGGACGTGGGACCATTAGAGACAAAGGAAAAGGATACTGAATCATTAGAAACAAAGTCATTAATGGAACAACCTGTTGAAGCAAGCACAATTAAAACGAAAATTGAACCTCATGAATTGCAGGTTTCCCTCCAGCTTCCCACTCAAACAAAAATAATTTCTTCACCGGTGCGTCCAACTGTCCGATCTGCTTCTGCTTCCACTTCTTATTTTAACTCCTTAAAAGGTTCACCTGTAGCTATCTCAAGATATCGTAGTGCACCATCAGCTCTTGGAATAACATCTGTGTTGCAGGATCATGAAGCAGTGGATATCAAAGAAGTAACTCATGCAGTTACAGTATCTCCTCCAGCTTCAGATTCCAAGGTGTTGAAAACTTCAGTTGATGCTCTTAAAACCACGGAAAAGGCTTTTGAATCCCTTTCTCCTGCAGCTGCAACTACACCACCGCCACCGCCACCACCATCTCCTCCTCCCCCATCATTTTCTCCAGCTCCTTCCCTTCCTAAAGGTCCTCCTCCACCGCCGCCTCCACCTGCGCTGTCTGGGTTTCCATCTTCATTGGGTATAAATGAATCAGTTTCTGTGCCTAGCACTCCTCCTCCTCCCCCGCCTCCACCTCCTAGCCTTTCAGGTTCTGCACCACCACCACCACCCCCTCCTCCCGCTTCTGCATTCCAAAATTCTTTGTCTGAGAACTCCAAAAGTGGTCCTCCTGTACCCCCACCTCCACCTCCTAGCCTTCCTGGTTCAGCTCCATCATCATCACCTTCAGCGCCACTACCACCCCCTCCTCCAGGCTCTACGTCCCAAAGTTCTTTGTCTAGCTCCACAAATGTTCCACCTGTACCCCCACCTCCCCTTTCTGCCAATGGATTGTCAAAACCTGGAGTTCCTGGACCTCCTGGAGTTCCTGGACCACCTGGACCACCTGGAGTTCCTGGACCACCTTCTGCTCCTTTTGGTGCAAAGGGTCGTGGCCTGATGCGAGCTAATGCAAAAGGTCAATCTAAGAGGAGCAATCTGAAACCTTACCATTGGTTAAAATTAACAAGGGCGATGCAAGGAAGCTTATGGGCTGAGACACAAAAACTAGATGAGTTTTGTAGGGCTCCAGAGTTTGACATGTCAGAACTTGAAACTTTGTTCTCCGCAGCTTCTCCAGCTTCTAATGAAAAAGGGGGAAAGTCAAATCGCCGTGCCTCTGGGCAAAAAGTTGAGAAAGTTCAACTGATTGAGCTCAGGCGGGCCTATAACTGTGAGATCATGCTTACAAAAGTCAAAATCCCTTTGCCTGACTTGATGTGTGCTGTGCTTGCAATGGATGATACAGTATTAGATATCGATCAAATTGAGAACCTTATAAAATTCTCTCCAACCAAAGAAGAGATGGAAACACTCAAGAACTATACCGGGAATAAGGACAACTTGGGAAAGTGTGAGCAGTTCTTCTTAGAATTGATGAAAGTGCCAAGAGTGGAAAGCAAGCTAAGAGTTTTCTCTTTTAAGATGCAATTCTTATCCCAGGTTTCAGAGCTGAAAAGAGATTTGAATATTGTGAATTCTGCATCTGAAGAGATAAGGAATTCAGTCAAGTTGAAAAGAATCATGCAGACCATTCTTTCTCTGGGTAATGCTTTGAACCATGGAACTGCAAGAGGTTCGGCTGTTGGGTTTCGATTGGATAGTCTCCTTAAACTAACTGATACACGAGCAAGAAACAACAAGATGACTCTTATGCATTATCTCTGTAAGGTGCTTGCTGAAAAACTAGGAGAACTTCTCGATTTCCATAAAGACCTATTGAGTTTGGAGGCGGCAACCAAGATACAATTAAAATACTTGGCAGAGGAAATGCAAGCTATTAGTAAAGGACTGGAGAAAGTAGTTCAGGAATTGACTGCATCAGAGAATGATGGACCTGTGTCAGAATTCTTCTGCCAGATTCTGAAGGAATTTCTTTCTTATGCTGAATCTGAAGTAAGGTCTTTGGCTCAACTTTATGCCAATGTGGGTAGAAATGCAGATGCATTGGCTTTATACTTTGGTGAAGATCCAGCACGTTGTCCATTTGAACAAGTTGTATCTACGCTGCTCAACTTTGTGAGGTTGTTCGTGAAAGCACATGACGAAAATTGCAAGCAGATTGAACTAGACAGAAAGAGAGCAGAGAAGGAAGCAGAGCATGAGAAGTTGAAGCTAGCTGCTGCCAAGAAGGAGGCTGAACATATGATGAGGACCACCATAAAGAGTGGGGATATTAAATGA 3882 0.4328 MHFALVGGCVFDYCFTTDVMEEDEYRVYLGGIIGQLRGHFPDASFMVFNMREGDSQSQISNILCDYDMTVIDYPRQYEGCPLLTMEMIHHFLRSGENWLQLGHQNVVLMHCERGGWPLLAFMLAALLIYRKMFTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYISRRNVGSEWPPLDRALTLDCVIIRLIPNMGGEGGCRPIFRIYGQDPFIPADRTPKVLFSTPKRSKLVRYCKQTDCELVKIDIHCHVQGDVVFECIHLHSDLEHEEMMFRVMFNTAFIRSNILMLNRDEIDILWNAKDCFPKNFRVEVLFSDMDASSSVISIDLPRVEEKDGLPVEAFAKVKEIFSNVDWLDSKEEVASVLQHITSSNILLEKFDAGVSAATSGLQRESSENSAAVLKAYSDPNIQTSAVQGKHSTSSLGSSLDFALGNKTEPLESKTLSENDMKTLESLASTDGDSLAKKIDLLGSKEKTIDNSSVSAPMEKNNDSLELKESPENSLRTSASTSQGKQLTPSLDEAKVPYKDAYSMTQDVGPLETKEKDTESLETKSLMEQPVEASTIKTKIEPHELQVSLQLPTQTKIISSPVRPTVRSASASTSYFNSLKGSPVAISRYRSAPSALGITSVLQDHEAVDIKEVTHAVTVSPPASDSKVLKTSVDALKTTEKAFESLSPAAATTPPPPPPPSPPPPSFSPAPSLPKGPPPPPPPPALSGFPSSLGINESVSVPSTPPPPPPPPPSLSGSAPPPPPPPPASAFQNSLSENSKSGPPVPPPPPPSLPGSAPSSSPSAPLPPPPPGSTSQSSLSSSTNVPPVPPPPLSANGLSKPGVPGPPGVPGPPGPPGVPGPPSAPFGAKGRGLMRANAKGQSKRSNLKPYHWLKLTRAMQGSLWAETQKLDEFCRAPEFDMSELETLFSAASPASNEKGGKSNRRASGQKVEKVQLIELRRAYNCEIMLTKVKIPLPDLMCAVLAMDDTVLDIDQIENLIKFSPTKEEMETLKNYTGNKDNLGKCEQFFLELMKVPRVESKLRVFSFKMQFLSQVSELKRDLNIVNSASEEIRNSVKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLGELLDFHKDLLSLEAATKIQLKYLAEEMQAISKGLEKVVQELTASENDGPVSEFFCQILKEFLSYAESEVRSLAQLYANVGRNADALALYFGEDPARCPFEQVVSTLLNFVRLFVKAHDENCKQIELDRKRAEKEAEHEKLKLAAAKKEAEHMMRTTIKSGDIK 1293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00623 1293 SUPERFAMILY Formin homology 2 domain (FH2 domain) 945 1269 - -
Viun8g00623 1293 ProSiteProfiles C2 tensin-type domain profile. 184 323 IPR014020 -
Viun8g00623 1293 Pfam C2 domain of PTEN tumour-suppressor protein 185 321 IPR014020 -
Viun8g00623 1293 SMART it6_source 708 1291 IPR015425 -
Viun8g00623 1293 ProSiteProfiles Formin homology-2 (FH2) domain profile. 870 1269 IPR015425 -
Viun8g00623 1293 Coils Coil 1292 1293 - -
Viun8g00623 1293 MobiDBLite consensus disorder prediction 817 856 - -
Viun8g00623 1293 PRINTS Proline rich extensin signature 686 707 - -
Viun8g00623 1293 PRINTS Proline rich extensin signature 710 726 - -
Viun8g00623 1293 PRINTS Proline rich extensin signature 739 764 - -
Viun8g00623 1293 Gene3D Formin, FH2 domain 867 1254 IPR042201 -
Viun8g00623 1293 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 186 323 IPR035892 -
Viun8g00623 1293 MobiDBLite consensus disorder prediction 734 763 - -
Viun8g00623 1293 SMART PTEN_C2_2 182 322 IPR014020 -
Viun8g00623 1293 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 59 172 IPR029021 -
Viun8g00623 1293 Gene3D - 181 326 - -
Viun8g00623 1293 MobiDBLite consensus disorder prediction 483 524 - -
Viun8g00623 1293 Coils Coil 1244 1280 - -
Viun8g00623 1293 Gene3D Protein tyrosine phosphatase superfamily 9 176 IPR029021 -
Viun8g00623 1293 PANTHER FORMIN-J 10 763 - -
Viun8g00623 1293 MobiDBLite consensus disorder prediction 542 563 - -
Viun8g00623 1293 Pfam Formin Homology 2 Domain 875 1243 IPR015425 -
Viun8g00623 1293 MobiDBLite consensus disorder prediction 774 807 - -
Viun8g00623 1293 MobiDBLite consensus disorder prediction 683 721 - -
Viun8g00623 1293 MobiDBLite consensus disorder prediction 672 878 - -
Viun8g00623 1293 MobiDBLite consensus disorder prediction 504 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00623 Viun-Chr8 4760716 4776400 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00623 10 387 FH2 protein (formin) Gene Family AT2G25050 69.657 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00623 - - pvu:PHAVU_001G042000g 938.332