Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00621 ATGGCATTGTTCCGCAAGTTCTTCTATAAGAAGCCCCCAGATGGGCTTCTAGAAATCACTGAAAGGGTTTATGTCTTTGATTACTGCTTTACCACGGATGTTATGGAAGAAGATGAATATAGAGTGTATCTAGGAGGAATAATTGGGCAACTTCGTGGTCACTTCCCCGATGCTTCATTCATGGTGTTCAACATGCGGGAAGGAGACAGCCAAAGCCAGATTTCAAACATTTTGTGTGACTATGATATGACTGTGATAGATTATCCTCGACAGTATGAAGGGTGCCCGTTGCTTACCATGGAGATGATCCATCATTTCTTGAGATCAGGTGAAAACTGGCTTCAACTTGGGCATCAAAATGTTGTCTTGATGCATTGTGAACGAGGTGGGTGGCCGTTACTAGCGTTTATGCTGGCTGCACTCTTGATTTATAGGAAGATGTTTACAGGGGAGCAGAAAACACTAGACATGATATATAAACAAGCTCCTCGGGAACTTCTGCAGTTGATGTCACCATTGAATCCTTTACCTTCACAATTGAGATATCTTCAGTACATATCAAGAAGAAATGTTGGTTCAGAATGGCCTCCTCTTGATAGGGCACTTACTTTGGACTGTGTAATTATAAGACTCATTCCTAACATGGGTGGAGAGGGTGGTTGCCGTCCTATATTTAGAATATATGGGCAAGACCCTTTTATTCCTGCAGATCGAACTCCCAAAGTTCTCTTTTCAACTCCAAAAAGGAGCAAACTTGTTCGCTACTGTAAGCAGACTGATTGTGAACTGGTTAAGATTGACATCCACTGTCATGTTCAAGGAGATGTCGTTTTTGAGTGTATTCATCTGCACAGTGATTTAGAGCATGAAGAAATGATGTTTCGGGTGATGTTTAATACAGCATTCATAAGATCAAATATTTTGATGCTTAACCGTGATGAAATCGACATACTATGGAATGCTAAAGATTGCTTCCCTAAGAATTTCAGAGTGGAGGTTCTTTTCTCAGATATGGATGCTTCATCTTCTGTTATTTCAATTGATCTGCCTCGTGTTGAGGAGAAAGATGGCCTCCCTGTTGAAGCATTTGCAAAGGTCAAGGAGATTTTCAGCAACGTGGATTGGCTAGATTCAAAGGAAGAAGTAGCAAGTGTGCTCCAACATATCACATCTTCAAATATCCTTCTGGAAAAATTCGACGCTGGGGTTTCTGCTGCAACTAGTGGCTTGCAAAGGGAGTCATCTGAAAATTCTGCAGCTGTTTTGAAGGCATACAGTGATCCAAACATTCAGACTTCTGCAGTTCAGGGGAAACATTCTACATCCTCATTGGGATCGTCTTTGGATTTTGCTTTGGGAAATAAGACCGAACCATTAGAGTCAAAGACATTGTCCGAAAATGACATGAAGACTCTAGAGTCATTAGCATCCACTGATGGAGATTCATTGGCAAAGAAGATTGATTTGTTAGGATCAAAGGAGAAAACAATTGATAACTCATCTGTTAGTGCTCCTATGGAAAAGAACAATGACTCTCTAGAACTGAAGGAATCACCAGAAAATAGCCTCAGGACTTCTGCTTCCACAAGTCAGGGGAAACAGCTTACTCCCTCATTAGATGAGGCCAAGGTTCCATATAAGGATGCATATTCAATGACACAGGACGTGGGACCATTAGAGACAAAGGAAAAGGATACTGAATCATTAGAAACAAAGTCATTAATGGAACAACCTGTTGAAGCAAGCACAATTAAAACGAAAATTGAACCTCATGAATTGCAGGTTTCCCTCCAGCTTCCCACTCAAACAAAAATAATTTCTTCACCGGTGCGTCCAACTGTCCGATCTGCTTCTGCTTCCACTTCTTATTTTAACTCCTTAAAAGGTTCACCTGTAGCTATCTCAAGATATCGTAGTGCACCATCAGCTCTTGGAATAACATCTGTGTTGCAGGATCATGAAGCAGTGGATATCAAAGAAGTAACTCATGCAGTTACAGTATCTCCTCCAGCTTCAGATTCCAAGGTGTTGAAAACTTCAGTTGATGCTCTTAAAACCACGGAAAAGGCTTTTGAATCCCTTTCTCCTGCAGCTGCAACTACACCACCGCCACCGCCACCACCATCTCCTCCTCCCCCATCATTTTCTCCAGCTCCTTCCCTTCCTAAAGGTCCTCCTCCACCGCCGCCTCCACCTGCGCTGTCTGGGTTTCCATCTTCATTGGGTATAAATGAATCAGTTTCTGTGCCTAGCACTCCTCCTCCTCCCCCGCCTCCACCTCCTAGCCTTTCAGGTTCTGCACCACCACCACCACCCCCTCCTCCCGCTTCTGCATTCCAAAATTCTTTGTCTGAGAACTCCAAAAGTGGTCCTCCTGTACCCCCACCTCCACCTCCTAGCCTTCCTGGTTCAGCTCCATCATCATCACCTTCAGCGCCACTACCACCCCCTCCTCCAGGCTCTACGTCCCAAAGTTCTTTGTCTAGCTCCACAAATGTTCCACCTGTACCCCCACCTCCCCTTTCTGCCAATGGATTGTCAAAACCTGGAGTTCCTGGACCTCCTGGAGTTCCTGGACCACCTGGACCACCTGGAGTTCCTGGACCACCTTCTGCTCCTTTTGGTGCAAAGGGTCGTGGCCTGATGCGAGCTAATGCAAAAGGTCAATCTAAGAGGAGCAATCTGAAACCTTACCATTGGTTAAAATTAACAAGGGCGATGCAAGGAAGCTTATGGGCTGAGACACAAAAACTAGATGAGTTTTGTAGGGCTCCAGAGTTTGACATGTCAGAACTTGAAACTTTGTTCTCCGCAGCTTCTCCAGCTTCTAATGAAAAAGGGGGAAAGTCAAATCGCCGTGCCTCTGGGCAAAAAGTTGAGAAAGTTCAACTGATTGAGCTCAGGCGGGCCTATAACTGTGAGATCATGCTTACAAAAGTCAAAATCCCTTTGCCTGACTTGATGTGTGCTGTGCTTGCAATGGATGATACAGTATTAGATATCGATCAAATTGAGAACCTTATAAAATTCTCTCCAACCAAAGAAGAGATGGAAACACTCAAGAACTATACCGGGAATAAGGACAACTTGGGAAAGTGTGAGCAGTTCTTCTTAGAATTGATGAAAGTGCCAAGAGTGGAAAGCAAGCTAAGAGTTTTCTCTTTTAAGATGCAATTCTTATCCCAGGTTTCAGAGCTGAAAAGAGATTTGAATATTGTGAATTCTGCATCTGAAGAGATAAGGAATTCAGTCAAGTTGAAAAGAATCATGCAGACCATTCTTTCTCTGGGTAATGCTTTGAACCATGGAACTGCAAGAGGTTCGGCTGTTGGGTTTCGATTGGATAGTCTCCTTAAACTAACTGATACACGAGCAAGAAACAACAAGATGACTCTTATGCATTATCTCTGTAAGGTGCTTGCTGAAAAACTAGGAGAACTTCTCGATTTCCATAAAGACCTATTGAGTTTGGAGGCGGCAACCAAGATACAATTAAAATACTTGGCAGAGGAAATGCAAGCTATTAGTAAAGGACTGGAGAAAGTAGTTCAGGAATTGACTGCATCAGAGAATGATGGACCTGTGTCAGAATTCTTCTGCCAGATTCTGAAGGAATTTCTTTCTTATGCTGAATCTGAAGTAAGGTCTTTGGCTCAACTTTATGCCAATGTGGGTAGAAATGCAGATGCATTGGCTTTATACTTTGGTGAAGATCCAGCACGTTGTCCATTTGAACAAGTTGTATCTACGCTGCTCAACTTTGTGAGGTTGTTCGTGAAAGCACATGACGAAAATTGCAAGCAGATTGAACTAGACAGAAAGAGAGCAGAGAAGGAAGCAGAGCATGAGAAGTTGAAGCTAGCTGCTGCCAAGAAGGAGGCTGAACATATGATGAGGACCACCATAAAGAGTGGGGATATTAAATGA 3927 0.4319 MALFRKFFYKKPPDGLLEITERVYVFDYCFTTDVMEEDEYRVYLGGIIGQLRGHFPDASFMVFNMREGDSQSQISNILCDYDMTVIDYPRQYEGCPLLTMEMIHHFLRSGENWLQLGHQNVVLMHCERGGWPLLAFMLAALLIYRKMFTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYISRRNVGSEWPPLDRALTLDCVIIRLIPNMGGEGGCRPIFRIYGQDPFIPADRTPKVLFSTPKRSKLVRYCKQTDCELVKIDIHCHVQGDVVFECIHLHSDLEHEEMMFRVMFNTAFIRSNILMLNRDEIDILWNAKDCFPKNFRVEVLFSDMDASSSVISIDLPRVEEKDGLPVEAFAKVKEIFSNVDWLDSKEEVASVLQHITSSNILLEKFDAGVSAATSGLQRESSENSAAVLKAYSDPNIQTSAVQGKHSTSSLGSSLDFALGNKTEPLESKTLSENDMKTLESLASTDGDSLAKKIDLLGSKEKTIDNSSVSAPMEKNNDSLELKESPENSLRTSASTSQGKQLTPSLDEAKVPYKDAYSMTQDVGPLETKEKDTESLETKSLMEQPVEASTIKTKIEPHELQVSLQLPTQTKIISSPVRPTVRSASASTSYFNSLKGSPVAISRYRSAPSALGITSVLQDHEAVDIKEVTHAVTVSPPASDSKVLKTSVDALKTTEKAFESLSPAAATTPPPPPPPSPPPPSFSPAPSLPKGPPPPPPPPALSGFPSSLGINESVSVPSTPPPPPPPPPSLSGSAPPPPPPPPASAFQNSLSENSKSGPPVPPPPPPSLPGSAPSSSPSAPLPPPPPGSTSQSSLSSSTNVPPVPPPPLSANGLSKPGVPGPPGVPGPPGPPGVPGPPSAPFGAKGRGLMRANAKGQSKRSNLKPYHWLKLTRAMQGSLWAETQKLDEFCRAPEFDMSELETLFSAASPASNEKGGKSNRRASGQKVEKVQLIELRRAYNCEIMLTKVKIPLPDLMCAVLAMDDTVLDIDQIENLIKFSPTKEEMETLKNYTGNKDNLGKCEQFFLELMKVPRVESKLRVFSFKMQFLSQVSELKRDLNIVNSASEEIRNSVKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLGELLDFHKDLLSLEAATKIQLKYLAEEMQAISKGLEKVVQELTASENDGPVSEFFCQILKEFLSYAESEVRSLAQLYANVGRNADALALYFGEDPARCPFEQVVSTLLNFVRLFVKAHDENCKQIELDRKRAEKEAEHEKLKLAAAKKEAEHMMRTTIKSGDIK 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00621 1308 Gene3D Protein tyrosine phosphatase superfamily 12 191 IPR029021 -
Viun8g00621 1308 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Viun8g00621 1308 Gene3D Formin, FH2 domain 882 1269 IPR042201 -
Viun8g00621 1308 Pfam Formin Homology 2 Domain 890 1258 IPR015425 -
Viun8g00621 1308 MobiDBLite consensus disorder prediction 498 536 - -
Viun8g00621 1308 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Viun8g00621 1308 Coils Coil 1259 1295 - -
Viun8g00621 1308 PANTHER FORMIN-J 1 778 - -
Viun8g00621 1308 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Viun8g00621 1308 MobiDBLite consensus disorder prediction 789 822 - -
Viun8g00621 1308 MobiDBLite consensus disorder prediction 687 893 - -
Viun8g00621 1308 MobiDBLite consensus disorder prediction 698 736 - -
Viun8g00621 1308 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Viun8g00621 1308 MobiDBLite consensus disorder prediction 832 871 - -
Viun8g00621 1308 MobiDBLite consensus disorder prediction 519 536 - -
Viun8g00621 1308 SMART PTEN_C2_2 197 337 IPR014020 -
Viun8g00621 1308 PRINTS Proline rich extensin signature 701 722 - -
Viun8g00621 1308 PRINTS Proline rich extensin signature 754 779 - -
Viun8g00621 1308 PRINTS Proline rich extensin signature 725 741 - -
Viun8g00621 1308 SMART it6_source 723 1306 IPR015425 -
Viun8g00621 1308 ProSiteProfiles Formin homology-2 (FH2) domain profile. 885 1284 IPR015425 -
Viun8g00621 1308 MobiDBLite consensus disorder prediction 557 578 - -
Viun8g00621 1308 MobiDBLite consensus disorder prediction 749 778 - -
Viun8g00621 1308 Gene3D - 196 341 - -
Viun8g00621 1308 SUPERFAMILY Formin homology 2 domain (FH2 domain) 960 1284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00621 Viun-Chr8 4760105 4776400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00621 1 402 FH2 protein (formin) Gene Family AT2G25050 70.471 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00621 - - pvu:PHAVU_001G042000g 987.252