Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00607 ATGAGTTGTGAACTGTTACTGTTAATTTATTGTTCATATTATCATCTGGAAAGAATGGGGACAAATCTCAGCACTCCCAAAACTGAAAAGTCTTCCGATGATGGAGAAAATGATCATCTTAGATATGGTTTATCATCAATGCAAGGCTGGCGTGCATCAATGGAAGATGCACATGCTGCACATCTTGATCTGGATGAATCCACTTCCTTTTTTGGAGTTTATGATGGTCATGGAGGTAAAGTGGTTGCCAAGTTTTGTGCTAAGTATCTTCACCAACAGGTGGTCAAGAGTGAAGCATACACAGCTGGAGATATAGGAACCTCTCTTCGGGAATCATTTTTCAGGATGGATGAGATGATGCGAGGTCAAAGGGGCTGGAGGGAATTGGCAAGTTTGGGTGATAAGATAAACAAGTTCAATGGTAAGATAGAAGGATTGATTTGGTCTCCAAGAAGCAGAGAATATAAGAAGGCTCAAGAGGATAGTTGGGCCTTTGAGGAGGGTCCTCATTCTAATTTTGGTGGACCAACTTCAGGAAGCACTGCGTGTGTTGCAGTTATAAGAAACAACCAACTTTTTGTAGCAAATGCTGGTGATTCACGTTGTGTAATATGTAGGAAGGGTCAGGCGTATGATTTGTCAATAGATCATAAACCTGATCTTGATTCTGAGAAGGATAGAATCATAAAAGCTGGTGGTTTTATTCATGCAGGAAGAGTTAATGGGAGTTTAAGCCTTGCAAGAGCTATAGGTGACATGGAGTTTAAGCAGAATAGATTCCTTCCTGCTGAAAAACAAATGGTGACAGCCAATCCAGACATAAATACTATTGAACTTTGTGATGAAGATGAATTTATAGTGCTTGCCTGTGATGGCATATGGGATTGCTTGTCAAGCCAACAATTGGTTGATTTCGTACGCCAACAACTTCTCATTGAAACAAAACTTTCTGCAGTTTGTGAAAGAGTGCTGGATCGATGTTTGGCACCAACAATAGCTATTGGTGATGGATGTGATAACATGACCATGATTTTAGTGCAGTTCAAAAAACTGAACCAGTCCAGTGCACCAACATAA 1077 0.403 MSCELLLLIYCSYYHLERMGTNLSTPKTEKSSDDGENDHLRYGLSSMQGWRASMEDAHAAHLDLDESTSFFGVYDGHGGKVVAKFCAKYLHQQVVKSEAYTAGDIGTSLRESFFRMDEMMRGQRGWRELASLGDKINKFNGKIEGLIWSPRSREYKKAQEDSWAFEEGPHSNFGGPTSGSTACVAVIRNNQLFVANAGDSRCVICRKGQAYDLSIDHKPDLDSEKDRIIKAGGFIHAGRVNGSLSLARAIGDMEFKQNRFLPAEKQMVTANPDINTIELCDEDEFIVLACDGIWDCLSSQQLVDFVRQQLLIETKLSAVCERVLDRCLAPTIAIGDGCDNMTMILVQFKKLNQSSAPT 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00607 358 SUPERFAMILY PP2C-like 22 350 IPR036457 -
Viun8g00607 358 CDD PP2Cc 41 348 IPR001932 -
Viun8g00607 358 SMART PP2C_4 31 346 IPR001932 -
Viun8g00607 358 Pfam Protein phosphatase 2C 160 330 IPR001932 -
Viun8g00607 358 Pfam Protein phosphatase 2C 41 122 IPR001932 -
Viun8g00607 358 PANTHER PROTEIN PHOSPHATASE 2C 32 347 IPR015655 GO:0004722|GO:0006470
Viun8g00607 358 ProSitePatterns PPM-type phosphatase domain signature. 70 78 IPR000222 GO:0043169
Viun8g00607 358 SMART PP2C_SIG_2 46 348 IPR001932 -
Viun8g00607 358 Gene3D - 18 349 IPR036457 -
Viun8g00607 358 ProSiteProfiles PPM-type phosphatase domain profile. 41 348 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00607 Viun-Chr8 4627244 4631702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00607 19 354 PP2C-type Phosphatase Gene Family AT2G25070 76.190 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00607 K17499 - gmx:100793667 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00607 8 4627244 4631702 Viun8g00607 8 4627244 4631702 ECH
Viun8g00607 8 4627244 4631702 Viun9g03175 9 39055247 39062373 PCT