Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00602 ATGTTGGCTACCATGGCACGTTTCCACAACATCAAAACTTTTCTTCTTTGCTACATCTTTCTCGTTCTTCCATTAACCATAGCTCAACCACTTTCCTTCAACATCACTAACTTCAACGATACTCAAAGTGCAAGCCTTGTTGGATACGCTGGTGTAGCCAAAACTGAGAACAGAAGCATAGTGCTAAATTCTCTCGTCGACAATGGAATTGGAAGAGCCATCTATGGCCTCCCTCTACGCTTCAAAAACTCTTCTAACGGACACGTCACTGATTTTTCTACCCGTTTTTCATTCACCATCGATGTGTCCTCGAGAACCGACTATGGCGACGGTTTTGCCTTCTACGTCGCACCCCTTGCCTACCCGATTCCGTCGGATTCAGGTGGTGGCGGTCTCGGCCTTTACGGTGCCAACCAAGATAACATCATTGCTGTTGAATTTGACACTTTTCCAAATGCTAATGTTGATCCACCAATGAAGCATGTGGGTATAAACAATAACTCCTTGGTGTCTCTCAACTCTTCCTTGTTTGATATTGACAGCAACATAGGGAACATGGGGCATGTGTTGATAACTTACAGTGCTTCTGCCAAACTCCTTGCTGTTTCATGGTTCTTTGAGGAAACCAGTTCTGGTTTTATGCCCAACACTTCTCTTTCGTACCAGATTGACCTAGGGGAAATTCTCCCGGAGTGGGTCACTGTTGGGTTTTCGGGTGCAACCGGGTTGTCTAATGAGGAGAATGTTATTCATTCCTGGGAACTCACGTCAACTCTGAATTCCACACAGTTAAACAGTAAAGAAAAAGAAGGCAATAATGGCATCACAGTTAAATACAAGTTTTCAGTCCAAGTAGTGGTTGTTGCAGTGAGTTGTTCTGTTTTGTTCATGCTAGTGGTTGCTGCTGTTTCTTGGTTTATCATCATCCAGAAGAGAAGAAACGAACATGATTTTGGTTTCAATGGAGAAGCTATGCCTAGAAGGTTTGGTTATGAGGAAATAGTTGCAGCCACGAACGGGTTTGCAGATGATAGAAGGCTGGGAGAAGGAGGCACTGGACAAGTTTACAAAGGGTTTCTGAGTGATTTAGGGCGCGTGGTTGCAGTGAAAAGGATATTTTCTGATGTAGAAGATTCTGAGGGAATATTCACAAACGAGGTGAAGATTATAAGTCGTCTTGTGCATAAAAACCTCGTGCAATTGATGGGGTGGTGCCATGAGCAAGGAGAGTTGTTACTGGTTTTTGAGTACATGAGTAATGGAAGCCTTGACACTCATATATTTGGCAACAGGAGAACCTTGACATGGGGTGTGAGATACAATATAGCGTTAGGTGTGGCTAGGGCACTGCGTTATCTTCATGAAGAGGTGGAGCAGTGTGTTCTTCACAGAGACATAAAGTCAAGTAATGTTTTGTTAGACACAGATTTCAACACTAAGGTTAGTGACTTTGGGATAGCAAAGTTGGTGGATCCAAGATTGAGGACTCAGAAGACAAGGGTGGTGGGGACATATGGGTACCTTGCACCTGAATATGTGAAGGAAGGAAGGGCCAGCAAGGAGTCTGACATGTATGGTTTTGGGGTTGTGGCTTTAGAGATAGGTTGTGGGAGGAGGACTTACCAGGATGGAGAGTATAACCATGTACCATTGACAAATTGGGTGTGGAAAAAGTATGTGGATGGAAATATTTTGGATGCTGCAGATGAGGGATTGAAGGGAGATTATGATGTGGAAGAAATGAGATGTTTGCTCACTCTGGGAATATGGTGTACTCACCCAGATCACAGGCAAAGGCCAAAGGCAGAACAGGTTATTAATACTCTAAAGCAAGAAACGCCATTGCCAATGCTTTCACTATGA 1863 0.4375 MLATMARFHNIKTFLLCYIFLVLPLTIAQPLSFNITNFNDTQSASLVGYAGVAKTENRSIVLNSLVDNGIGRAIYGLPLRFKNSSNGHVTDFSTRFSFTIDVSSRTDYGDGFAFYVAPLAYPIPSDSGGGGLGLYGANQDNIIAVEFDTFPNANVDPPMKHVGINNNSLVSLNSSLFDIDSNIGNMGHVLITYSASAKLLAVSWFFEETSSGFMPNTSLSYQIDLGEILPEWVTVGFSGATGLSNEENVIHSWELTSTLNSTQLNSKEKEGNNGITVKYKFSVQVVVVAVSCSVLFMLVVAAVSWFIIIQKRRNEHDFGFNGEAMPRRFGYEEIVAATNGFADDRRLGEGGTGQVYKGFLSDLGRVVAVKRIFSDVEDSEGIFTNEVKIISRLVHKNLVQLMGWCHEQGELLLVFEYMSNGSLDTHIFGNRRTLTWGVRYNIALGVARALRYLHEEVEQCVLHRDIKSSNVLLDTDFNTKVSDFGIAKLVDPRLRTQKTRVVGTYGYLAPEYVKEGRASKESDMYGFGVVALEIGCGRRTYQDGEYNHVPLTNWVWKKYVDGNILDAADEGLKGDYDVEEMRCLLTLGIWCTHPDHRQRPKAEQVINTLKQETPLPMLSL 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00602 620 Pfam Protein kinase domain 342 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00602 620 Pfam Legume lectin domain 31 267 IPR001220 GO:0030246
Viun8g00602 620 FunFam L-type lectin-domain containing receptor kinase IX.1 418 619 - -
Viun8g00602 620 SUPERFAMILY Protein kinase-like (PK-like) 325 608 IPR011009 -
Viun8g00602 620 ProSitePatterns Protein kinases ATP-binding region signature. 347 370 IPR017441 GO:0005524
Viun8g00602 620 PANTHER - 51 612 - -
Viun8g00602 620 CDD lectin_legume_LecRK_Arcelin_ConA 31 259 IPR001220 GO:0030246
Viun8g00602 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Viun8g00602 620 ProSitePatterns Legume lectins beta-chain signature. 143 149 IPR019825 -
Viun8g00602 620 ProSitePatterns Legume lectins alpha-chain signature. 229 238 IPR000985 -
Viun8g00602 620 Gene3D Transferase(Phosphotransferase) domain 1 418 618 - -
Viun8g00602 620 FunFam L-type lectin-domain containing receptor kinase IX.1 326 417 - -
Viun8g00602 620 Gene3D Phosphorylase Kinase; domain 1 326 417 - -
Viun8g00602 620 Gene3D - 29 273 - -
Viun8g00602 620 ProSiteProfiles Protein kinase domain profile. 341 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00602 620 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 262 IPR013320 -
Viun8g00602 620 SMART serkin_6 341 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00602 Viun-Chr8 4558931 4561250 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00602 13 618 Receptor kinase-like Gene Family AT5G10530 41.997 1.25e-159 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Viun8g00602 Pkinase 4.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00602 - - gmx:100800327 910.983