Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00601 ATGAATTCCTTAGCTCCAGCAAAAGTTCAGACCAGAAAACAGCCATTGAGAATGAGATTTCTAAACATGGTGACCATTTTTGTTCTACTCTTAGCATTTCCTTCTCCTTTCCTTAGAACAGTGGAATCACTAAATTTCAACATAACAAACTTCGACGACCCTGAGAGTGCAAAAAACATGGCGTACATGGGTGACGGCAAAACAAAGAATGGTTCCGTAGACCTTAACATAGTTTCGTATTTATTCCGTGTCGGGAGAGCCTTGTCTGCACAACCTTTGCACCTTTGGGATTCGTCTTCAAGAGTTGTAACAGACTTCACAACACGCTTCACTTTTTCTATTGAAAAAAGAAACGATGAAACGGGTTCCTACGCTGACGGTTTCGCCTTCTATATAGCCCCTCACGGCTATCAGATTCCTCCAAACGGTGCAGGTGGCACTTTTGGCCTTTTCAATGGCTCTTACAATAGCTTCCTTCCCCAAAATCGCATTCTCGCTGTTGAGTTTGACACGTTTAACGGCTCAATTGACCCTCCAATGCAGCACGTTGGCATAGACGATAACTCTATCGTATCTGCGACTTACGGAAAGTTTGAGATCGACGAAAATCTGGGGAAGAAATGTAACGCTTTGGTAACCTACAGTGCTTCCAACAAGACCCTTTTTGTGGCTTGGTCCTTCAACGGAACCGCAACGAGATACTCCAATTCTTCACTTTCTTACCAGATAGACCTCTTGGGAATTCTACCCGAGTGGGTTGATGTTGGGTTCTCTGCTTCCACCGGCGAACTCACCGAACGAAACATCATTCACTCGTGGGAGTTCAGTTCCACGCTGAATTCTTCCACTGCTTCGAAAGATAATCCCTCTGGTGGCAATGAGAAGAGGGGGAATGGGTTGAGCAGGGCTATGGTGGTTGTGGTGGTGGCGTGTTCAATGATTTTGGTGGCCGTGGCAGCGAATGTTGCAGCTTGGATAGTAATCATGAAGAAGAGAAGGGGTAACGGCGATTGTGGTTATGATGAGGTTGGTAAAGGTCGTTCGGCTAGGTTTGATTTGGACAGGGAAACTATACCGAGAAGGTTTGATTACACAGAACTAGTTGAAGCCACGAAAGGGTTCGCGGATGAAACAAGGCTTGGAAGAGGAGGCTCGGGACAGGTTTACAAAGGGGTTCTGAGCCATTTAGGGAGGGTTGTTGCTGTGAAAAGGATTTTCACTAACTTTGAAAGTTCAGAGAGGGTTTTCATCAACGAGGTTAAGATCATAAGCCGTCTTATACACAGAAACTTGGTGCAGTTCGTAGGGTGGTGCCACGAGCAAGGAGAGTTTCTGTTGGTTTTTGAGTACATGCCCAATGGAAGCCTCGACACTCATCTCTTTGGCGACAAGAAAACTCTGACCTGGGACATTAGGTACAAGGTAGCGTTGGGAGTGGCTTTGGGACTTCGTTATCTTCACGAGGATGCGGAGCAGAGTGTTCTTCACAGGGATATTAAGTCAGCGAATGTGTTGTTGGACACAGATTTTAGCACAAAGCTTGGAGATTTTGGGATGGCAAAGTTGGTGGATCCAAGGTTGAAGACTCAGAGGACAGGGGTGGTGGGGACTTACGGGTACCTTGCCCCAGAATACATGAACGGAGGTAGGGCTAGCAAGGAATCAGACATTTATAGTTTTGGGGTTGTGGCTCTTGAGCTTGCATGTGGAAGGAGGACTTACCGTGATGGAGAGTTTCATGTGCCTCTGATGAACTGGGTGTGGCAACAGTATGTGGAAGGGAATGTGATGGATGTTGTTGATGAGAGATTGAAGAAGGAGTTTGATGTGGATAAAATGAGAAGCTTGATCGTTGTAGGGTTGTGGTGTACTAACCCTAACGACAAGGAAAGACCAAAGGCTGCAGAAGTAATAAAAGTTCTTGAGCTAGAAACGCCATTACCAGAGCTTCCACTTGATATGCATGATCGTCCTTCTTTTTCTCTAAGTTCTTACACGCATGCACTACCCAATTATAATTCCTTACAATCTCTACCCTTCACTAACAGTTTTGTCACTACTGGACGTTAA 2070 0.4556 MNSLAPAKVQTRKQPLRMRFLNMVTIFVLLLAFPSPFLRTVESLNFNITNFDDPESAKNMAYMGDGKTKNGSVDLNIVSYLFRVGRALSAQPLHLWDSSSRVVTDFTTRFTFSIEKRNDETGSYADGFAFYIAPHGYQIPPNGAGGTFGLFNGSYNSFLPQNRILAVEFDTFNGSIDPPMQHVGIDDNSIVSATYGKFEIDENLGKKCNALVTYSASNKTLFVAWSFNGTATRYSNSSLSYQIDLLGILPEWVDVGFSASTGELTERNIIHSWEFSSTLNSSTASKDNPSGGNEKRGNGLSRAMVVVVVACSMILVAVAANVAAWIVIMKKRRGNGDCGYDEVGKGRSARFDLDRETIPRRFDYTELVEATKGFADETRLGRGGSGQVYKGVLSHLGRVVAVKRIFTNFESSERVFINEVKIISRLIHRNLVQFVGWCHEQGEFLLVFEYMPNGSLDTHLFGDKKTLTWDIRYKVALGVALGLRYLHEDAEQSVLHRDIKSANVLLDTDFSTKLGDFGMAKLVDPRLKTQRTGVVGTYGYLAPEYMNGGRASKESDIYSFGVVALELACGRRTYRDGEFHVPLMNWVWQQYVEGNVMDVVDERLKKEFDVDKMRSLIVVGLWCTNPNDKERPKAAEVIKVLELETPLPELPLDMHDRPSFSLSSYTHALPNYNSLQSLPFTNSFVTTGR 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00601 689 Gene3D Transferase(Phosphotransferase) domain 1 451 657 - -
Viun8g00601 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 494 506 IPR008271 GO:0004672|GO:0006468
Viun8g00601 689 ProSitePatterns Protein kinases ATP-binding region signature. 380 403 IPR017441 GO:0005524
Viun8g00601 689 Pfam Protein kinase domain 375 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00601 689 Pfam Legume lectin domain 43 287 IPR001220 GO:0030246
Viun8g00601 689 ProSitePatterns Legume lectins beta-chain signature. 165 171 IPR019825 -
Viun8g00601 689 ProSiteProfiles Protein kinase domain profile. 374 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00601 689 FunFam L-type lectin-domain containing receptor kinase IX.1 451 651 - -
Viun8g00601 689 CDD lectin_legume_LecRK_Arcelin_ConA 44 279 IPR001220 GO:0030246
Viun8g00601 689 FunFam L-type lectin-domain containing receptor kinase IX.1 42 293 - -
Viun8g00601 689 SUPERFAMILY Protein kinase-like (PK-like) 357 670 IPR011009 -
Viun8g00601 689 FunFam L-type lectin-domain containing receptor kinase IX.1 359 450 - -
Viun8g00601 689 Gene3D - 41 291 - -
Viun8g00601 689 CDD STKc_IRAK 380 642 - -
Viun8g00601 689 SUPERFAMILY Concanavalin A-like lectins/glucanases 42 280 IPR013320 -
Viun8g00601 689 Gene3D Phosphorylase Kinase; domain 1 359 450 - -
Viun8g00601 689 SMART serkin_6 374 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00601 689 PANTHER - 70 645 - -
Viun8g00601 689 ProSitePatterns Legume lectins alpha-chain signature. 249 258 IPR000985 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00601 Viun-Chr8 4549276 4551576 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00601 22 654 Receptor kinase-like Gene Family AT5G10530 43.012 4.37e-171 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Viun8g00601 Pkinase 5.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00601 - - gmx:100305427 1044.26