Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00600 ATGATAGCTACCTCAGAAAATTCCCACCACTGGACAACTTTTCTTGTTCTGCTTATCCTTCCAATGACCATAGTTCAACCATTTTCCTTCAGCATAACTAACTTTGAAGACTCTGAAAGTGCAGCCCTAGTTGGATACGCTGGCGTAGCCAAGATTGTGAACGGAACCATACTACTCAACTCACTCACCTACAGTGGAGTTGGAAGAGCAATCTATGGCCAACCAATACACCTCAAAAACTCTTCTAACCAACGAGTCACCGATTTTTCAACTCGTTTTTCGTTCACTATCCAATCCCCTAACTCCATTTACGGTGATGGCTTTGCCTTCTACGTTGCACCTCTTGCCTACCAGATTCCGAAAACCGACTTAGCTGGTGTCCGTCTCGGCCTATACGATGAAAACATACCCATAGTTGCTGTCGAATTTGACACTTTTATAAACGAATTAGACCCACCATTGCAGCACGTAGGGATCAACAATGGCTCTGTGGTATCTCTCAATTATACCAAGTTTGATATCGAGAGCAACAAAGGGAACATGGGGCATGCGTTGATAACCTACAACGCTTCTGCCAAACTCCTTGCTGTTTCGTGGTTCTTTGAGAGAACCAGTTCCGCTTCTACGCCTAACGCTTATCTTTCCTACCAGATCGACCTAGCGGAACTTCTACCGGAGTGGGTCGCTCTTGGTTTTTCAGGTTCAACCGGGTCGTCCATTGAGGAAAACGTCATCCATTCCTGGGAATTCAGTTCTAGTCTGGATCTAACCATTTCCCCAGCAAACGAAGAAAATGTGATCGCAACAAAATACAAGGGTCGGAGAAAAGTAGTGGTTGTTGCAGTGATTTGGTGTACTATTTTTGTGATCGTGGTTGTTGGTGTTACGTGTTGGATGATGAAGAAGAGAAGAAACGAGGATGGATTTGGTTTTGACAGAGAAGCTATGCCTAGAAGGTTTGGTTATGACGAGTTAGTTGCAGCCACGAACGGGTTTGCAGATGATAGAAGGGTTGGAGGAGAAGGTGGGCATGGAGAAGTTTACAAAGGATTTGTGAGTGATTTAGGACGCGTGGTGGCGGTGAAAAGGGTTTGTTCAGACGTGGAAGATTCGGAGGGAATATTTAGAAACGAGGTGAAGATCATAAGCCGACTTATACATAAAAACCTGGTGCAGTTGATCGGGTGGTGCGAGGAGGAAGGGGAGTTATTGATAGTTATGGAGTACTTAGATAATGGAAGCCTTGAGACTCATCTGTTTGGGAACAGAAGGAGTTTGAAATGGGGTGTGAGATACAATATAGCGTTAGGTGTGGCTAGGGCACTGCGTTATCTTCATGAAGAGGTGGAGCAGTGTGTTGTTCATAGAGACATAAAGTCAAGTAATGTTTTGTTAGACACAGATTTCAACACTAAGGTTAGTGATTTTGGGATAGCAAAGTTGGTGGATCCGAGATTGAGGACTCAGAGGACAAAGGTGGTGGGGACATATGGGTACCTAGCTCCAGAATATGTAAAGGAAGGGAGGGTTAGCAAAGAATCAGACATATACAGTTTTGGGGTTTTGGCTTTGGAGATAGCATGTGGAAGGAGGAGTTATGATGATGTGGGTTTGATGAATTGGGTGTGGAAACATTATGTGGATGGGAAGATTTTGAATGGTGCTGATGAGAAAATGAAGAGGGATTTTGATGTGAGTGAAATGAGATGCTTGCTCACTGTGGGACTATGGTGTACCCTACAAGACCATAAGGAAAGACCAACAGCAGAACAGGTTATTAATGTTCTTCAACAAAAAGTGTCACTGCCAATCCTGTCTACTAAACATGCATGA 1833 0.4397 MIATSENSHHWTTFLVLLILPMTIVQPFSFSITNFEDSESAALVGYAGVAKIVNGTILLNSLTYSGVGRAIYGQPIHLKNSSNQRVTDFSTRFSFTIQSPNSIYGDGFAFYVAPLAYQIPKTDLAGVRLGLYDENIPIVAVEFDTFINELDPPLQHVGINNGSVVSLNYTKFDIESNKGNMGHALITYNASAKLLAVSWFFERTSSASTPNAYLSYQIDLAELLPEWVALGFSGSTGSSIEENVIHSWEFSSSLDLTISPANEENVIATKYKGRRKVVVVAVIWCTIFVIVVVGVTCWMMKKRRNEDGFGFDREAMPRRFGYDELVAATNGFADDRRVGGEGGHGEVYKGFVSDLGRVVAVKRVCSDVEDSEGIFRNEVKIISRLIHKNLVQLIGWCEEEGELLIVMEYLDNGSLETHLFGNRRSLKWGVRYNIALGVARALRYLHEEVEQCVVHRDIKSSNVLLDTDFNTKVSDFGIAKLVDPRLRTQRTKVVGTYGYLAPEYVKEGRVSKESDIYSFGVLALEIACGRRSYDDVGLMNWVWKHYVDGKILNGADEKMKRDFDVSEMRCLLTVGLWCTLQDHKERPTAEQVINVLQQKVSLPILSTKHA 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00600 610 Pfam Legume lectin domain 29 255 IPR001220 GO:0030246
Viun8g00600 610 CDD lectin_legume_LecRK_Arcelin_ConA 28 254 IPR001220 GO:0030246
Viun8g00600 610 ProSitePatterns Legume lectins alpha-chain signature. 224 233 IPR000985 -
Viun8g00600 610 ProSiteProfiles Protein kinase domain profile. 333 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00600 610 SUPERFAMILY Protein kinase-like (PK-like) 316 597 IPR011009 -
Viun8g00600 610 Gene3D Phosphorylase Kinase; domain 1 317 409 - -
Viun8g00600 610 FunFam L-type lectin-domain containing receptor kinase IX.1 410 606 - -
Viun8g00600 610 ProSitePatterns Legume lectins beta-chain signature. 139 145 IPR019825 -
Viun8g00600 610 Gene3D Transferase(Phosphotransferase) domain 1 410 609 - -
Viun8g00600 610 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 255 IPR013320 -
Viun8g00600 610 Pfam Protein kinase domain 340 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00600 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Viun8g00600 610 Gene3D - 26 267 - -
Viun8g00600 610 SMART serkin_6 333 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00600 610 PANTHER - 54 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00600 Viun-Chr8 4542798 4544630 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00600 17 608 Receptor kinase-like Gene Family AT5G10530 41.521 3.60e-155 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Viun8g00600 Pkinase 1.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00600 - - vum:124841915 1042.72