LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun8g00597	ATGGTGGCAACCTTCGAAAATTTCCACTACTTCAAAACTTTTCTTCTGCTGCTCATCCTCTGTATCCTTCCAATAAACATAGCTCAACCACTTTCCTTCACCATAACTAACTTTAACGACACTGAAAGTGCAAGCATCGTTGGATACGCAGGCGCAGCCATGATAGAGAACGGAGCTGCAGTGCTCAACCCACTCATCAACAATGGAGTTGGAAGAGCCGTCTATGGCCAACCTCTACGCCTCAAAAACTCTTCCAACGGACATGTCACTGACTTTTCAACTCGTTTTTCTTTCACAATCGACGTACCTTTAGGAACCAAATACGGTGATGGCTTTGCCTTCTACTTGGCACCCCTTGCATACCAGATTCCGACCGCCACCTCTGATGGCTCCCTTCTCGGTCTATACGATGACACCCAAAATAACATCGTTGCTGTCGAATTCGACACTTACATAAACGAGTTAGACCCACCAATGCAACACGTAGGGATCAACAATAACTCTGTGGCATCCCTCAATTATACCAAGTTTGATATTGAGAGCAACACAGGGAAGATGGGGCATGCCTTGATAACTTATAATGCTTCTGCCAAACTCCTGGCTGTTTCGTGGTCCTTTGATGGAACTGGTTCTTCTTCTACTCCTACCGCTTATCTCTCGTACAAGATTGACCTGTGGGCTATTTTACCGGAGTGGGTCAATGTTGGGTTTTCGGGTTCAACTGGATCGTCCACTGAGAAAAATGTGATCCATTCCTGGGAGTTCAGTTCAAGCCTGGATATTAATTCTATGCATGGACAGGGGAAAAAAGAAAATGGCATCGCAACCAAATGCAAGGTTCAGGTCAAAACAGTAGTTGTTACAGTGATTTGTTCGGTTGTTTTTCTGCTCGTGGTTATTAGTATTTCTTGGATGACCATGAAAAAGGGAAGAACAGATGATGGTTTTGGTTTCGATAGAGAAGCTATGCCTAGAAGGTTTGGTTATGAGGAAATAGTTGCAGCTACCAACGGGTTTGCGGATGATAGAAGGCTGGGAGAAGGAGGCTCTGGACAAGTTTACAAAGGGTTTCTGAGTGATTTAGGGCGCGTGGTTGCTGTGAAGAGGATATTTTCTGATATTGAAGATTGTGAGAGAATATTTATAAACGAGGTGAAGATTATAAGCCGTCTTATACATAGAAACCTTGTGCAATTCATGGGGTGGTGCCACGAGAAAGAGGAGTTGTTACTGGTTTTTGAGTACATGAGTAATGGAAGCCTTGACAATCATCTGTTTGGCAAGAGAAGAAGTTTGACATGGGATGTGAGGTACAAGATAGCGTTAGGTGTGGCAAGAGCACTTCGTTATCTTCATGAAGACGCGGAGCAGAGTGTTGTTCATAGGGACATAAAGTCAGCTAATGTTTTGTTGGACACAGATTTCAACACAAAGATTAGTGACTTTGGGATAGCAAGGTTGGTGGATCCGAGACTGAGGACTCAGAGGACAAAGGTGGTGGGGACATATGGGTACCTAGCTCCAGAATATATAAAGGAAGGGAGGGTTAGCAAAGAATCCGACATGTACAGTTTTGGAGTTTTGGCTTTGGAGATAGCATGTGGAAGGAGGACTTACCAGGACGGTGAAGATAATCACGTGCCTTTGAGAAAATGGGTATGGAAACATTATGTGGATGGGAATATATTAAATGCTGCTGATAAGGAATTGAAGAGTGATTTTGACGTAAATGAGATGAAATGCTTGGTGAGTGTAGGAATATGGTGTACCCTCGAAGATCACAAGGAAAGGCCAACCTCAGAACAGGTTATAAATGTTCTTAAACAACAACTCCCATTGCCACTGTTTTCTTCTAAACCCTCTCATAATGCGAAACTTGATTCCTTTGAATCGTCTTCCAGAAAAGCATAA	1911	0.4328	MVATFENFHYFKTFLLLLILCILPINIAQPLSFTITNFNDTESASIVGYAGAAMIENGAAVLNPLINNGVGRAVYGQPLRLKNSSNGHVTDFSTRFSFTIDVPLGTKYGDGFAFYLAPLAYQIPTATSDGSLLGLYDDTQNNIVAVEFDTYINELDPPMQHVGINNNSVASLNYTKFDIESNTGKMGHALITYNASAKLLAVSWSFDGTGSSSTPTAYLSYKIDLWAILPEWVNVGFSGSTGSSTEKNVIHSWEFSSSLDINSMHGQGKKENGIATKCKVQVKTVVVTVICSVVFLLVVISISWMTMKKGRTDDGFGFDREAMPRRFGYEEIVAATNGFADDRRLGEGGSGQVYKGFLSDLGRVVAVKRIFSDIEDCERIFINEVKIISRLIHRNLVQFMGWCHEKEELLLVFEYMSNGSLDNHLFGKRRSLTWDVRYKIALGVARALRYLHEDAEQSVVHRDIKSANVLLDTDFNTKISDFGIARLVDPRLRTQRTKVVGTYGYLAPEYIKEGRVSKESDMYSFGVLALEIACGRRTYQDGEDNHVPLRKWVWKHYVDGNILNAADKELKSDFDVNEMKCLVSVGIWCTLEDHKERPTSEQVINVLKQQLPLPLFSSKPSHNAKLDSFESSSRKA	636

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun8g00597	636	Pfam	Protein kinase domain	340	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun8g00597	636	SUPERFAMILY	Protein kinase-like (PK-like)	323	626	IPR011009	-
	Viun8g00597	636	SMART	serkin_6	339	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun8g00597	636	CDD	lectin_legume_LecRK_Arcelin_ConA	31	259	IPR001220	GO:0030246
	Viun8g00597	636	ProSiteProfiles	Protein kinase domain profile.	339	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun8g00597	636	ProSitePatterns	Legume lectins alpha-chain signature.	229	238	IPR000985	-
	Viun8g00597	636	SUPERFAMILY	Concanavalin A-like lectins/glucanases	29	261	IPR013320	-
	Viun8g00597	636	Gene3D	-	29	282	-	-
	Viun8g00597	636	FunFam	L-type lectin-domain containing receptor kinase IX.1	416	617	-	-
	Viun8g00597	636	ProSitePatterns	Protein kinases ATP-binding region signature.	345	368	IPR017441	GO:0005524
	Viun8g00597	636	PANTHER	-	51	611	-	-
	Viun8g00597	636	Pfam	Legume lectin domain	31	264	IPR001220	GO:0030246
	Viun8g00597	636	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	459	471	IPR008271	GO:0004672\|GO:0006468
	Viun8g00597	636	Gene3D	Phosphorylase Kinase; domain 1	324	415	-	-
	Viun8g00597	636	ProSitePatterns	Legume lectins beta-chain signature.	144	150	IPR019825	-
	Viun8g00597	636	Gene3D	Transferase(Phosphotransferase) domain 1	416	623	-	-
	Viun8g00597	636	FunFam	L-type lectin-domain containing receptor kinase IX.1	29	273	-	-
	Viun8g00597	636	FunFam	L-type lectin-domain containing receptor kinase IX.1	324	415	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun8g00597	Viun-Chr8	4521185	4523459	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun8g00597	13	619	Receptor kinase-like Gene Family	AT5G10530	43.178	2.31e-159	471

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Viun8g00597		Pkinase	5.3e-53	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun8g00597	-		-	gmx:100801935	874.774