Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00592 CTCCTCAAGAACACTTCTAATGGACATGTCACTGATTTCTCAACCCGTTTTTCATTCACCATCCAAGCTTCTAAAACCGTCTACGGTGATGGCTTTGCTTTCTACGTCGCACCCATTGCCTACCAGATTCTCAACAGCGATTTAGCCGGTTACCAGCTCGGTCTGTACGATGAAAGCGTGCCCATAATTGCTGTCGAATTTGACACTTACGTAAACGATTTAGACCCACCAATGCAACACGTAGGAATCAACAATAACTCTGTGGCATCTCTCAACTATACCAAGTTTGATATCGAGAGCAACATAGGGAAGATGGGGCATGCGTTGATAACTTATAACGCTTCTGCAAAACTCCTTGCTGTCTCGTGGTTCTTTGATGGAACTAGTTCTGCTTCTACTCCAAACACTGATCTTTCGTACCATATTGACCTGGGGGCAATTTTACCGGAGTGGGTCAATGTTGGGTTTTCGGGTGCAACTGGGTCGTTCCAAGAGGAAAACGTTATCCATTCCTGGGAATTCAGTTCAAGTCTGGATTTAAATTCCACGAAGGAAGAGGTAAACAAAGAAAATGGCATCCCAACCAAATGCAAGGTTCACATGAAGGTAGTAATTGTTACAGTGATTTGTTCTATTGTTTTTGTGCTCGTGGTTATTAGTACTTCTTGGTTAACCATCAAAAGGAGAAGAGCCGAGGATGGTTTTGGTTTCGATAGAGAAGCTATGCCTAGAAGGTTTGGTTATGAGGAAATAGTTGCACCCACGAACGGGTTTGCAGATGATAGAAGGCTGGGAGAAGGAGGCTCTGGACAAGTTTACAAAGGGTTTCTGCGTGATTTAGGGCGCGTGGTTGCTGTGAAGAGGATATTTTCTGATGTTGAAGATTGTGAGAGAATATTCAGAAACGAGGTGAAGATTATAAGTCGTGTTATACATAGAAACCTTGTGCAATTCATGGGGTGGTGCCACGAGAAAGGGGAGCTGTTACTGGTTTTTGAGTACATGAGTAATGGAAGCCTTGACAATCATCTGTTTGGGAAGAGAAGAAGTTTGACATGGGATGTGAGGTACAAGATAGCGTTAGGTGTGGCAAGAGCACTTCGTTATCTTCATGAAGACGCGGAGCAGTGTGTTGTTCATAGGGACATAAAGTCAGGTAATGTTTTGTTAGACACAGATTTCAACTGTAAGATTAGTGACTTTGGGATAGCGAAGTTGGTGGATCCGAGGTTGAGGACTCAGAAGACAAGGGTGGTGGGGACATATGGGTATCTTGCCCCTGAATATGTGAAGGAAGGAAGGGCTAGCAAGGAATCTGACATGTACGGTTTTGGGGTGTTGGCTTTGGAGATAGCATGTGGAAGGAGGACTTGCAAGGATGGGGAATATAATCACGTGCCTTTGACGATTTGGGTGTGGAAACATTATGTGGATGGGAATATTTTGAATGCTGCTGATGAGGAATTGAAGGGCGATTTTAATGCAAAAGAAATGACATGCTTGCTTACTGTGGGACTGTGGTGTACCCTCCAAGATCACAGGGCAAGACCAACGGCAGAACATGTCATTGATGTTCTTAAACATAAGTGTTCACTGCCAATGCTTTGTACTTAA 1614 0.438 LLKNTSNGHVTDFSTRFSFTIQASKTVYGDGFAFYVAPIAYQILNSDLAGYQLGLYDESVPIIAVEFDTYVNDLDPPMQHVGINNNSVASLNYTKFDIESNIGKMGHALITYNASAKLLAVSWFFDGTSSASTPNTDLSYHIDLGAILPEWVNVGFSGATGSFQEENVIHSWEFSSSLDLNSTKEEVNKENGIPTKCKVHMKVVIVTVICSIVFVLVVISTSWLTIKRRRAEDGFGFDREAMPRRFGYEEIVAPTNGFADDRRLGEGGSGQVYKGFLRDLGRVVAVKRIFSDVEDCERIFRNEVKIISRVIHRNLVQFMGWCHEKGELLLVFEYMSNGSLDNHLFGKRRSLTWDVRYKIALGVARALRYLHEDAEQCVVHRDIKSGNVLLDTDFNCKISDFGIAKLVDPRLRTQKTRVVGTYGYLAPEYVKEGRASKESDMYGFGVLALEIACGRRTCKDGEYNHVPLTIWVWKHYVDGNILNAADEELKGDFNAKEMTCLLTVGLWCTLQDHRARPTAEHVIDVLKHKCSLPMLCT 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00592 537 Pfam Protein kinase domain 259 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00592 537 SUPERFAMILY Protein kinase-like (PK-like) 242 524 IPR011009 -
Viun8g00592 537 ProSitePatterns Protein kinases ATP-binding region signature. 264 287 IPR017441 GO:0005524
Viun8g00592 537 Gene3D Transferase(Phosphotransferase) domain 1 335 535 - -
Viun8g00592 537 CDD lectin_legume_LecRK_Arcelin_ConA 2 178 IPR001220 GO:0030246
Viun8g00592 537 ProSitePatterns Legume lectins beta-chain signature. 63 69 IPR019825 -
Viun8g00592 537 SMART serkin_6 258 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00592 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 378 390 IPR008271 GO:0004672|GO:0006468
Viun8g00592 537 FunFam L-type lectin-domain containing receptor kinase IX.1 335 536 - -
Viun8g00592 537 ProSitePatterns Legume lectins alpha-chain signature. 148 157 IPR000985 -
Viun8g00592 537 PANTHER - 12 528 - -
Viun8g00592 537 FunFam L-type lectin-domain containing receptor kinase IX.1 243 334 - -
Viun8g00592 537 ProSiteProfiles Protein kinase domain profile. 258 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00592 537 Gene3D - 1 199 - -
Viun8g00592 537 SUPERFAMILY Concanavalin A-like lectins/glucanases 3 182 IPR013320 -
Viun8g00592 537 Gene3D Phosphorylase Kinase; domain 1 243 334 - -
Viun8g00592 537 Pfam Legume lectin domain 2 186 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00592 Viun-Chr8 4412005 4413665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00592 2 537 Receptor kinase-like Gene Family AT5G10530 44.007 1.63e-153 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Viun8g00592 Pkinase 2.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00592 - - gmx:100800327 818.535