Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00585 ATGAGTTCGAGTTCAAGAACGTACGAGGAATCGCAACCCCACCCGCCCCAAGAAATAGATTGGCACATGCTCGACAAGTCCAAGTTCTTCTTCCTAGGAACAGCGCTCTTCTCCGCCGTCTCCGCCGCCATCTACCCCGCCGTCGTTCTGAAGACACGTCAGCAAATGTCCGCCGCCGAAATCTCGTGCCGCCACATGTCGCGGTCCATCATGCGGTACGAGGGTCTCCGAGGTTTCTACCGAGGTTTCGGCACCTCCTTGATGGGAACAATCCCCGCACGCGCCCTTTACATGTCGGCGCTCGAAGTGACCAAGAGCAAAGTCGCCGCCGCCACCGTTCGATGGGGGTTCTCCGATGCCTCTGCCACTGCAATCGCTAATGCCGCCGGAGGAGTGGCTTCTGCCATGGCAGCACAGTTGGTGTGGACCCCAGTTGATGTTGTTAGCCAGAGGCTCATGGTACAAGGAGTGTGCTACAGAAATGGGTTTGACGCATTCAGAAAAATTCTGGGTGTGGACGGTCCAAGAGGGTTCTACAGGGGGTTCGGGGTTTCGATCGTGACCTACGCTCCCTCCAACGCGGTATGGTGGGCTTCGTATTCGATGGTGCACAAGCTCATCTGGGGCACGTTGGGTTCGAAGAAGGAGGGTGTGAGCTTAGGACGCGATTGGAGGGTGGTGATGGGTGTGCAAGGGTTAAGTGCAGTTATGGCAAGTGGGGTTTGTGCATTAGTGACGATGCCACTGGATACGATAAAGACGAGGTTGCAGGTGTTGGAGGCAGAGGAAGTTAGTGTCGTTGAGGTGGTAAGGGATTTGGTGAGGGAAGGAGGGGTTTTGGCTTGTTACAGAGGGTTGGGACCAAGGTGGGTGTCCATGTCCGTTTCTGCAGCCGCCATGATTACTACCTATGAGTTCTTGAAACGTGTGTCGGCTAAGAATGGTGATAGATTAACACTGTCTTCAGTCTAG 972 0.5494 MSSSSRTYEESQPHPPQEIDWHMLDKSKFFFLGTALFSAVSAAIYPAVVLKTRQQMSAAEISCRHMSRSIMRYEGLRGFYRGFGTSLMGTIPARALYMSALEVTKSKVAAATVRWGFSDASATAIANAAGGVASAMAAQLVWTPVDVVSQRLMVQGVCYRNGFDAFRKILGVDGPRGFYRGFGVSIVTYAPSNAVWWASYSMVHKLIWGTLGSKKEGVSLGRDWRVVMGVQGLSAVMASGVCALVTMPLDTIKTRLQVLEAEEVSVVEVVRDLVREGGVLACYRGLGPRWVSMSVSAAAMITTYEFLKRVSAKNGDRLTLSSV 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00585 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 27 107 IPR018108 -
Viun8g00585 323 SUPERFAMILY Mitochondrial carrier 22 307 IPR023395 -
Viun8g00585 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 206 IPR018108 -
Viun8g00585 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 226 310 IPR018108 -
Viun8g00585 323 PRINTS Mitochondrial carrier protein signature 80 98 IPR002067 GO:0055085
Viun8g00585 323 PRINTS Mitochondrial carrier protein signature 131 153 IPR002067 GO:0055085
Viun8g00585 323 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 9 314 - -
Viun8g00585 323 Pfam Mitochondrial carrier protein 40 107 IPR018108 -
Viun8g00585 323 Pfam Mitochondrial carrier protein 232 314 IPR018108 -
Viun8g00585 323 Pfam Mitochondrial carrier protein 123 207 IPR018108 -
Viun8g00585 323 Gene3D Mitochondrial carrier domain 27 318 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00585 Viun-Chr8 4359743 4361502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00585 12 314 Chloroplast and Mitochondria Gene Families AT5G26200 62.848 4.92e-141 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00585 K15121 - gmx:100797365 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00585 8 4359743 4361502 Viun8g00585 8 4359743 4361502 ECH
Viun9g03263 9 39551539 39553215 Viun8g00585 8 4359743 4361502 ECH