Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00581 ATGAAGCAAAAAGAAGTTGGAGTGATGTACAAGAGAAGAATGGAAAGAACACAAGACTACCTAAGATACTGTCTTCAGACAGCACAAGAAAATGGAATGTTGGACATCATTCTCAGCTGCAATGGAGAATTTCAACCATCTCCACTCTCTCTTCACTCCATTACCAGCCCTCAAGCTCATGCCCACCACCCCAATCTGGCACCCATTATTCATCAAGCTAAAACCAATGGCTGGTACATTCATCCAAATGAGATTGAATTGGAAGAAAAAATTGGGGAAGGAAGCACCGCAGAGATTCACAGGGGAACATGGCGTGGATTTGAGGTCGCTGTGAAGTGCATATCGCAAGAATTTTTCCGTACAAATGAAAACGGCGTCGTTTACTTCTCCCAGGAACTCGAAACGCTGTCGCGCCAGCGCCACAGGTTCGTGCTTCAGCTCATGGGCGCGTGCATCCAGCCTCCACAGCACGCGTGGGTGGTCACCGAGTACCTCAGCACCACGCTGAAGGAGTGGCTCCATGGGCCTGGGAACCGGCGCAGGGAGAGGATGGTGCCACTTCCACCCTTGCAGGAGAGAGTGGGCCGGGCCTTGGAAATAGCCCAAGCTATGCAGTACCTGCACGAGCAAAAGCCCAAACTCGTTCACCGCGACTTGAAGCCCAGCAACATTTTTCTTGATGACGCCCTGCACGTTAGAGTAGCGGACTTCGGCCACGCACGGTTCTTGGGTGACGAAGAAATGGCCCTCACCGGAGAAACAGGAACATACGTTTACATGGCACCCGAGGTAATCCGTTGTGAACCTTACAATGAAAGTTGCGATGTGTACAGTTTTGGGATCATACTGAACGAGCTACTAACTGGGAATTACCCTTATGTTGAGACAGAGTATGGTCCCACCAAGATTGCCATGGAAGTTGTGGAGGGTAAGCTTCGACCTAAGCTTCCATGTGATGATGATGTTGATGAAGTGGGAGAGCTTATTGACCTTATTTGTCTTTGTTGGCACCAAAATCCAACTACTCGTCCATCCTTTGCAACAATCACTCTTTCTCTCAAAACTTATGTTAACAACAATCTCATTTAA 1089 0.4867 MKQKEVGVMYKRRMERTQDYLRYCLQTAQENGMLDIILSCNGEFQPSPLSLHSITSPQAHAHHPNLAPIIHQAKTNGWYIHPNEIELEEKIGEGSTAEIHRGTWRGFEVAVKCISQEFFRTNENGVVYFSQELETLSRQRHRFVLQLMGACIQPPQHAWVVTEYLSTTLKEWLHGPGNRRRERMVPLPPLQERVGRALEIAQAMQYLHEQKPKLVHRDLKPSNIFLDDALHVRVADFGHARFLGDEEMALTGETGTYVYMAPEVIRCEPYNESCDVYSFGIILNELLTGNYPYVETEYGPTKIAMEVVEGKLRPKLPCDDDVDEVGELIDLICLCWHQNPTTRPSFATITLSLKTYVNNNLI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00581 362 CDD STKc_MAP3K-like 91 353 - -
Viun8g00581 362 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 68 353 - -
Viun8g00581 362 Gene3D Transferase(Phosphotransferase) domain 1 187 361 - -
Viun8g00581 362 SUPERFAMILY Protein kinase-like (PK-like) 61 349 IPR011009 -
Viun8g00581 362 Pfam Protein kinase domain 86 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00581 362 Gene3D Phosphorylase Kinase; domain 1 73 165 - -
Viun8g00581 362 ProSiteProfiles Protein kinase domain profile. 85 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00581 362 ProSitePatterns Protein kinases ATP-binding region signature. 91 112 IPR017441 GO:0005524
Viun8g00581 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Viun8g00581 362 SMART serkin_6 85 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00581 Viun-Chr8 4224808 4226653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00581 75 349 MAP Kinase Kinase Kinase AT2G17700 38.406 1.02e-51 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Viun8g00581 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00581 - - pvu:PHAVU_001G0393001 660.988