Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00577 ATGGGGTGGGGTCACCTCGGAAGGCATGGGTCAGATTCAGGCGACGGAACGGAGGCTGGTCCGAGCACCCCCGCCACCGAACCACGGCGGTTCCCACTGGCAGCACAGCCAGAAATGATGCGTGCCGCCGAGAAGGACGATCAATACGCATCTTTCGTCTACGAAGCCTGTCGTGACGCCTTTCGCCACCTCTTTGGTACCAGAGTTGCAGTGGCTTACCAAAACGAGACGAAGCTCTTAGGGCAGATGCTTTACTACGTTCTCACAACGGGCTCCGGCCAACAAACCCTTGGAGAGGAATACTGTGACATCACTCAGGTTGCAGGAACTTATGGACTTCCTCCTACACCTGCGAGGCGTGCTCTTTTCATTGTATATCAGACGGCTATTCCATATATGGCAGAACGGATTAGTTCTAGAATTGCTTCACGAGGCATTGTCCTTGCTGACTCAGAGTCTGCCGAGGGTTTTGGAGAAAATGCCCAAAGGAGCCCTGGTTCTCAGATTTCTGGCACTGGTCCTTTATCCTCGTCGGGACAATCTGTGACAACTCTGTCAAGGTTGAAGGGGAAACTGAGTGCATTTTGGTTGCATTTGGTTCAGAGATGGCCCACGATGCTCCCTTTTGTTCGTGAGTTCTTGCAGTTGGCTCTTCGTGCTAACCTTATGTTGTTCTACTTTGAAGGCCTCTATTATCATATATCTAAACGTGCTGCTGGCATTCGTTATGTATTTATTGGAAAAGCATCAAATCAAAGACCTAGATACCAAATACTAGGAGTATTTCTGTTGATTCAACTTTGTATAATAGCTGCTGAAGGTCTCCGCCGAAGAAATTTTACTTCAATTACTGGTTCAGTTCATCAAGCATCCTTTGCATCCCACGATAGATCAGCAGGACATGGTTTACCTGTTTTAAATGAAGAGGGTAATCTGGCAACTCCAGATATTGACAAAGGAAGTTGGGTCTCTGATTCTTCATCTTCTGAGCATCATGCAGTTAGTGGGGTTAGCAAGTGCACACTTTGCTTGAGTAATCGTCAATACCCAACAGCTACTTCCTGTGGCCATGTTTTCTGCTGGAACTGTATCACAGAATGGTGCAATGAAAAGCCAGAGTGCCCTCTTTGCCGCACCCCCATAACACACTCGAGTCTAGTTTGTGTATATCATTCGGACTTCTAG 1185 0.4768 MGWGHLGRHGSDSGDGTEAGPSTPATEPRRFPLAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGTYGLPPTPARRALFIVYQTAIPYMAERISSRIASRGIVLADSESAEGFGENAQRSPGSQISGTGPLSSSGQSVTTLSRLKGKLSAFWLHLVQRWPTMLPFVREFLQLALRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCIIAAEGLRRRNFTSITGSVHQASFASHDRSAGHGLPVLNEEGNLATPDIDKGSWVSDSSSSEHHAVSGVSKCTLCLSNRQYPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00577 394 ProSitePatterns Zinc finger RING-type signature. 355 364 IPR017907 -
Viun8g00577 394 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 32 392 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Viun8g00577 394 FunFam Peroxisome biogenesis factor 10 315 391 - -
Viun8g00577 394 MobiDBLite consensus disorder prediction 1 31 - -
Viun8g00577 394 Pfam Pex2 / Pex12 amino terminal region 46 277 IPR006845 -
Viun8g00577 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 391 IPR013083 -
Viun8g00577 394 Pfam Zinc finger, C3HC4 type (RING finger) 339 383 - -
Viun8g00577 394 CDD RING-HC_PEX10 338 389 - -
Viun8g00577 394 MobiDBLite consensus disorder prediction 157 181 - -
Viun8g00577 394 SMART ring_2 340 377 IPR001841 -
Viun8g00577 394 SUPERFAMILY RING/U-box 339 383 - -
Viun8g00577 394 ProSiteProfiles Zinc finger RING-type profile. 340 378 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00577 335 390 C3H Transcription Factor Family AT4G27470 37.879 2.60e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00577 K13346 - gmx:100783914 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00577 8 4156917 4160846 Viun8g00577 8 4156917 4160846 ECH