Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00564 ATGCCAGATGAGATTGGTGACTGTTCATCATTGAAGAACTTGGACTTGTCATTTAACGAAATTAGAGGGGATATCCCATTTTCTATTTCTAAGTTGAAACAACTGGAGAATCTGATTTTGAAGAACAACCAGTTGATTGGACCAATTCCTTCAACTTTGTCTCAGATTCCTAATTTGAAGATTCTAGACCTGGCTCTAAATAATCTAAGTGGTGAAATACCAAGGCTTCTATACTGGAACGAAGTTTTGCAGTATCTGGGCTTAAGAGGGAACAATTTGATTGGTTCACTATCACCAGATATGTGCCAGTTAACTGGGCTGTGGTATTTTGATGTCAGAAACAATAGCCTGACAGGAAGTATTCCAGAAAATATTGGCAATTGTACTACCTTCCAGGTTTTGGATTTATCCTACAACCAGCTAACTGGAGAGATACCATTCAATATTGGATTCCTACAAATAGCTACTTTGTCATTGCAAGGCAATAAACTCTCTGGACATATTCCATCGGTGATTGGTCTCATGCAAGCACTTGCTGTCTTAGACTTGAGCTGTAACATGTTAAGTGGACCGATACCTCCTATCTTGGGAAATTTGACCTACACAGAGAAACTATACTTGCATGGAAACAAGCTGACTGGCTTCATCCCCCCGGAGCTTGGAAATATGACAAAACTTCACTATTTGGAACTGAATGACAATCATTTAAGTGGACATATTCCCCCTGAGCTTGGAAAGCTTACTGATTTGTTTGATTTAAATGTTGCTAATAACAATCTCGAAGGAACAATTCCTAGCAATATTAGCTCGTGTAAAAATCTAAACAGCCTCAATGTGCATGGAAACAAGTTGAATGGAACAATTCCCCCTGCTTTGCAAAGCTTGGAGAGCATGACCTCTTTGAATCTTTCTTCCAACAATCTTCAGGGTGCAATTCCAATTGAACTGTCACGGATCGGTAATTTGGATACGTTGGATATTTCAAACAATCATCTAGTTGGATCCATTCCTTCTTCCCTTGGTGACTTGGAACATCTTCTGAAGTTGAATCTAAGCAGAAACAATTTGACAGGAGTTATTCCAGCAGAATTTGGAAATCTTAGAAGTGTCATGGAAATTGATCTTTCAAATAATGAACTCTCTGGCCTGATTCCTGAAGAACTTAGCCAGCTTCAGAACATGATATCATTGAGACTTGAAAACAACAAATTAACTGGGGATGTGGCATCACTTTCGAATTGTCTTACTCTCTCTGTGCTTAATGTGTCCTATAACAAACTATTTGGCGTTATCCCCACTAGTAACAACTTTACCAGGTTTCCCCCTGACAGTTTCATCGGAAACCCTGGTCTTTGTGGTAATTGGCTAAATTTGCCGTGTCATGGTTCTCGGCCTGCAGAGCGAGTTACATTATCTAAGGCAGCCATTCTTGGAATTACTCTTGGTGCCCTTGTGATTCTTCTAATGGTATTGCTGGCAGCTTGCCGGCCACACAGTCCTCCTTTTCCTGATGGATCACTTGACAAACCAGTTAATTACTCACCTCCAAAACTGGTGATTCTTCATATGAATATGGCACTTCATGTGTATGAAGATATCATGAGGATGACAGAAAATCTTAGTGAAAAGTATATAATTGGATATGGTGCGTCAAGTACAGTTTATAAATGTGTTCTCAAGAATTGCAAGCCAGTGGCTATCAAGAGGATCTATTCTCAATACCCCCAATGCATTAAAGAATTTGAAACTGAACTTGAGACTGTTGGCAGCATTAAGCACCGGAATCTGGTCAGTCTCCAGGGCTACTCTTTGTCCCCTTATGGCCACCTTCTGTTTTATGACTACATGGAAAATGGCAGTCTGTGGGATCTTCTTCATGGACCTACTAAGAAGAAAAAGCTTGACTGGGATCTGCGTCTAAAAGTAGCACTTGGAGCAGCACAAGGACTTGCATATCTACACCATGATTGCAGTCCTAGAATAATCCACAGGGATGTGAAATCATCAAACATTTTATTGGACGCAGACTTTGAGCCCCATCTCACTGATTTTGGCATTGCCAAAAGCCTCTGCCCCACAAAGTCTCATACTTCTACTTACATAATGGGCACAATTGGCTACATAGACCCTGAATATGCTAGAACTTCCCGTCTCACTGAGAAATCTGATGTGTACAGTTATGGCATCGTTTTACTGGAGTTGCTAACTGGAAGGAAAGCAGTTGACAATGAATCCAACCTCCACCATCTGATTTTGTCCAAAGCAGCAACGAATGCTGTAATGGAAACAGTTGATCCAGACATTACTGCCACATGCAAGGACCTTGGAGCAGTGAAAAAGGTTTACCAGCTCGCTCTATTATGCACAAAGAGGCAACCAGCTGACAGACCTACAATGCACGAAGTGACAAGAGTTCTTGGAAGCCTTGTGCCATCAAACACCCCTCAAAAACAAGCAGTTGCACCACCACCTGCTTCAAACCCATCTGCAAAAGTGCCATGCTACATGGATGAGTATGCAAACCTCAAGACTCCACACTTGGTGAATTGCCCCTCAATGAGCACCTCAGATGCACAGCTCTTCCTCAAGTTTGGAGAAGTAATCTCTCAGAACAGTGAGTGA 2622 0.4142 MPDEIGDCSSLKNLDLSFNEIRGDIPFSISKLKQLENLILKNNQLIGPIPSTLSQIPNLKILDLALNNLSGEIPRLLYWNEVLQYLGLRGNNLIGSLSPDMCQLTGLWYFDVRNNSLTGSIPENIGNCTTFQVLDLSYNQLTGEIPFNIGFLQIATLSLQGNKLSGHIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLTYTEKLYLHGNKLTGFIPPELGNMTKLHYLELNDNHLSGHIPPELGKLTDLFDLNVANNNLEGTIPSNISSCKNLNSLNVHGNKLNGTIPPALQSLESMTSLNLSSNNLQGAIPIELSRIGNLDTLDISNNHLVGSIPSSLGDLEHLLKLNLSRNNLTGVIPAEFGNLRSVMEIDLSNNELSGLIPEELSQLQNMISLRLENNKLTGDVASLSNCLTLSVLNVSYNKLFGVIPTSNNFTRFPPDSFIGNPGLCGNWLNLPCHGSRPAERVTLSKAAILGITLGALVILLMVLLAACRPHSPPFPDGSLDKPVNYSPPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRIYSQYPQCIKEFETELETVGSIKHRNLVSLQGYSLSPYGHLLFYDYMENGSLWDLLHGPTKKKKLDWDLRLKVALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDADFEPHLTDFGIAKSLCPTKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKAATNAVMETVDPDITATCKDLGAVKKVYQLALLCTKRQPADRPTMHEVTRVLGSLVPSNTPQKQAVAPPPASNPSAKVPCYMDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00564 873 Gene3D Ribonuclease Inhibitor 336 462 IPR032675 -
Viun8g00564 873 ProSitePatterns Protein kinases ATP-binding region signature. 546 568 IPR017441 GO:0005524
Viun8g00564 873 ProSiteProfiles Protein kinase domain profile. 540 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00564 873 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 83 805 - -
Viun8g00564 873 SMART serkin_6 540 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00564 873 Pfam Protein kinase domain 543 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00564 873 Pfam Leucine rich repeat 253 308 IPR001611 GO:0005515
Viun8g00564 873 Pfam Leucine rich repeat 321 380 IPR001611 GO:0005515
Viun8g00564 873 SUPERFAMILY Protein kinase-like (PK-like) 517 806 IPR011009 -
Viun8g00564 873 SUPERFAMILY L domain-like 156 440 - -
Viun8g00564 873 ProSiteProfiles Leucine-rich repeat profile. 10 33 IPR001611 GO:0005515
Viun8g00564 873 SUPERFAMILY L domain-like 2 217 - -
Viun8g00564 873 Gene3D Phosphorylase Kinase; domain 1 513 615 - -
Viun8g00564 873 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 511 615 - -
Viun8g00564 873 Gene3D Transferase(Phosphotransferase) domain 1 616 821 - -
Viun8g00564 873 Gene3D Ribonuclease Inhibitor 1 238 IPR032675 -
Viun8g00564 873 SMART LRR_typ_2 367 390 IPR003591 -
Viun8g00564 873 SMART LRR_typ_2 223 247 IPR003591 -
Viun8g00564 873 SMART LRR_typ_2 56 80 IPR003591 -
Viun8g00564 873 SMART LRR_typ_2 343 366 IPR003591 -
Viun8g00564 873 SMART LRR_typ_2 104 128 IPR003591 -
Viun8g00564 873 SMART LRR_typ_2 295 319 IPR003591 -
Viun8g00564 873 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 73 - -
Viun8g00564 873 Gene3D Ribonuclease Inhibitor 239 335 IPR032675 -
Viun8g00564 873 ProSitePatterns Serine/Threonine protein kinases active-site signature. 661 673 IPR008271 GO:0004672|GO:0006468
Viun8g00564 873 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 191 463 - -
Viun8g00564 873 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 616 817 - -
Viun8g00564 873 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 80 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00564 Viun-Chr8 4014925 4023053 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00564 1 872 Receptor kinase-like Gene Family AT5G07180 65.789 0.0 1124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Viun8g00564 Pkinase 4.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00564 K20718 - gmx:100782307 1657.11