Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00562 ATGGCATTTCGATTTGGGGTCCTTATTTTGCCTTTGCTAATTTCTTTGAGTGTTAACTCTGTGGAATCTGATGATGGAGCAACGCTGTTGGAGATAAAGAAGTCATTCAGGGATGTGGATAATGTTCTATATGATTGGACAGACTCACCATCATCAGATTATTGTGCCTGGAGAGGGATAACATGCGACAATGTCACATTTAATGTTGTTGCACTCAATCTTTCTGGGTTGAACCTTGATGGGGAAATTTCACCTGCAATAGGGAAACTTCAGAGTTTGGTCTCTATTGACCTGAGAGAAAACAGGTTATCGGGGCAGATGCCAGATGAGATTGGTGACTGTTCATCATTGAAGAACTTGGACTTGTCATTTAACGAAATTAGAGGGGATATCCCATTTTCTATTTCTAAGTTGAAACAACTGGAGAATCTGATTTTGAAGAACAACCAGTTGATTGGACCAATTCCTTCAACTTTGTCTCAGATTCCTAATTTGAAGATTCTAGACCTGGCTCTAAATAATCTAAGTGGTGAAATACCAAGGCTTCTATACTGGAACGAAGTTTTGCAGTATCTGGGCTTAAGAGGGAACAATTTGATTGGTTCACTATCACCAGATATGTGCCAGTTAACTGGGCTGTGGTATTTTGATGTCAGAAACAATAGCCTGACAGGAAGTATTCCAGAAAATATTGGCAATTGTACTACCTTCCAGGTTTTGGATTTATCCTACAACCAGCTAACTGGAGAGATACCATTCAATATTGGATTCCTACAAATAGCTACTTTGTCATTGCAAGGCAATAAACTCTCTGGACATATTCCATCGGTGATTGGTCTCATGCAAGCACTTGCTGTCTTAGACTTGAGCTGTAACATGTTAAGTGGACCGATACCTCCTATCTTGGGAAATTTGACCTACACAGAGAAACTATACTTGCATGGAAACAAGCTGACTGGCTTCATCCCCCCGGAGCTTGGAAATATGACAAAACTTCACTATTTGGAACTGAATGACAATCATTTAAGTGGACATATTCCCCCTGAGCTTGGAAAGCTTACTGATTTGTTTGATTTAAATGTTGCTAATAACAATCTCGAAGGAACAATTCCTAGCAATATTAGCTCGTGTAAAAATCTAAACAGCCTCAATGTGCATGGAAACAAGTTGAATGGAACAATTCCCCCTGCTTTGCAAAGCTTGGAGAGCATGACCTCTTTGAATCTTTCTTCCAACAATCTTCAGGGTGCAATTCCAATTGAACTGTCACGGATCGGTAATTTGGATACGTTGGATATTTCAAACAATCATCTAGTTGGATCCATTCCTTCTTCCCTTGGTGACTTGGAACATCTTCTGAAGTTGAATCTAAGCAGAAACAATTTGACAGGAGTTATTCCAGCAGAATTTGGAAATCTTAGAAGTGTCATGGAAATTGATCTTTCAAATAATGAACTCTCTGGCCTGATTCCTGAAGAACTTAGCCAGCTTCAGAACATGATATCATTGAGACTTGAAAACAACAAATTAACTGGGGATGTGGCATCACTTTCGAATTGTCTTACTCTCTCTGTGCTTAATGTGTCCTATAACAAACTATTTGGCGTTATCCCCACTAGTAACAACTTTACCAGGTTTCCCCCTGACAGTTTCATCGGAAACCCTGGTCTTTGTGGTAATTGGCTAAATTTGCCGTGTCATGGTTCTCGGCCTGCAGAGCGAGTTACATTATCTAAGGCAGCCATTCTTGGAATTACTCTTGGTGCCCTTGTGATTCTTCTAATGGTATTGCTGGCAGCTTGCCGGCCACACAGTCCTCCTTTTCCTGATGGATCACTTGACAAACCAGTTAATTACTCACCTCCAAAACTGGTGATTCTTCATATGAATATGGCACTTCATGTGTATGAAGATATCATGAGGATGACAGAAAATCTTAGTGAAAAGTATATAATTGGATATGGTGCGTCAAGTACAGTTTATAAATGTGTTCTCAAGAATTGCAAGCCAGTGGCTATCAAGAGGATCTATTCTCAATACCCCCAATGCATTAAAGAATTTGAAACTGAACTTGAGACTGTTGGCAGCATTAAGCACCGGAATCTGGTCAGTCTCCAGGGCTACTCTTTGTCCCCTTATGGCCACCTTCTGTTTTATGACTACATGGAAAATGGCAGTCTGTGGGATCTTCTTCATGGACCTACTAAGAAGAAAAAGCTTGACTGGGATCTGCGTCTAAAAGTAGCACTTGGAGCAGCACAAGGACTTGCATATCTACACCATGATTGCAGTCCTAGAATAATCCACAGGGATGTGAAATCATCAAACATTTTATTGGACGCAGACTTTGAGCCCCATCTCACTGATTTTGGCATTGCCAAAAGCCTCTGCCCCACAAAGTCTCATACTTCTACTTACATAATGGGCACAATTGGCTACATAGACCCTGAATATGCTAGAACTTCCCGTCTCACTGAGAAATCTGATGTGTACAGTTATGGCATCGTTTTACTGGAGTTGCTAACTGGAAGGAAAGCAGTTGACAATGAATCCAACCTCCACCATCTGATTTTGTCCAAAGCAGCAACGAATGCTGTAATGGAAACAGTTGATCCAGACATTACTGCCACATGCAAGGACCTTGGAGCAGTGAAAAAGGTTTACCAGCTCGCTCTATTATGCACAAAGAGGCAACCAGCTGACAGACCTACAATGCACGAAGTGACAAGAGTTCTTGGAAGCCTTGTGCCATCAAACACCCCTCAAAAACAAGCAGTTGCACCACCACCTGCTTCAAACCCATCTGCAAAAGTGCCATGCTACATGGATGAGTATGCAAACCTCAAGACTCCACACTTGGTGAATTGCCCCTCAATGAGCACCTCAGATGCACAGCTCTTCCTCAAGTTTGGAGAAGTAATCTCTCAGAACAGTGAGTGA 2940 0.4143 MAFRFGVLILPLLISLSVNSVESDDGATLLEIKKSFRDVDNVLYDWTDSPSSDYCAWRGITCDNVTFNVVALNLSGLNLDGEISPAIGKLQSLVSIDLRENRLSGQMPDEIGDCSSLKNLDLSFNEIRGDIPFSISKLKQLENLILKNNQLIGPIPSTLSQIPNLKILDLALNNLSGEIPRLLYWNEVLQYLGLRGNNLIGSLSPDMCQLTGLWYFDVRNNSLTGSIPENIGNCTTFQVLDLSYNQLTGEIPFNIGFLQIATLSLQGNKLSGHIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLTYTEKLYLHGNKLTGFIPPELGNMTKLHYLELNDNHLSGHIPPELGKLTDLFDLNVANNNLEGTIPSNISSCKNLNSLNVHGNKLNGTIPPALQSLESMTSLNLSSNNLQGAIPIELSRIGNLDTLDISNNHLVGSIPSSLGDLEHLLKLNLSRNNLTGVIPAEFGNLRSVMEIDLSNNELSGLIPEELSQLQNMISLRLENNKLTGDVASLSNCLTLSVLNVSYNKLFGVIPTSNNFTRFPPDSFIGNPGLCGNWLNLPCHGSRPAERVTLSKAAILGITLGALVILLMVLLAACRPHSPPFPDGSLDKPVNYSPPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRIYSQYPQCIKEFETELETVGSIKHRNLVSLQGYSLSPYGHLLFYDYMENGSLWDLLHGPTKKKKLDWDLRLKVALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDADFEPHLTDFGIAKSLCPTKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKAATNAVMETVDPDITATCKDLGAVKKVYQLALLCTKRQPADRPTMHEVTRVLGSLVPSNTPQKQAVAPPPASNPSAKVPCYMDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00562 979 SUPERFAMILY Protein kinase-like (PK-like) 623 912 IPR011009 -
Viun8g00562 979 ProSiteProfiles Leucine-rich repeat profile. 116 139 IPR001611 GO:0005515
Viun8g00562 979 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 617 721 - -
Viun8g00562 979 Gene3D Transferase(Phosphotransferase) domain 1 722 927 - -
Viun8g00562 979 Pfam Protein kinase domain 649 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00562 979 Gene3D Ribonuclease Inhibitor 186 295 IPR032675 -
Viun8g00562 979 Gene3D Ribonuclease Inhibitor 22 185 IPR032675 -
Viun8g00562 979 Gene3D Ribonuclease Inhibitor 296 569 IPR032675 -
Viun8g00562 979 SMART LRR_typ_2 401 425 IPR003591 -
Viun8g00562 979 SMART LRR_typ_2 449 472 IPR003591 -
Viun8g00562 979 SMART LRR_typ_2 162 186 IPR003591 -
Viun8g00562 979 SMART LRR_typ_2 210 234 IPR003591 -
Viun8g00562 979 SMART LRR_typ_2 90 114 IPR003591 -
Viun8g00562 979 SMART LRR_typ_2 473 496 IPR003591 -
Viun8g00562 979 SMART LRR_typ_2 329 353 IPR003591 -
Viun8g00562 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 767 779 IPR008271 GO:0004672|GO:0006468
Viun8g00562 979 SUPERFAMILY RNI-like 194 535 - -
Viun8g00562 979 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 187 296 - -
Viun8g00562 979 ProSitePatterns Protein kinases ATP-binding region signature. 652 674 IPR017441 GO:0005524
Viun8g00562 979 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Viun8g00562 979 Gene3D Phosphorylase Kinase; domain 1 619 721 - -
Viun8g00562 979 SMART serkin_6 646 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00562 979 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 22 186 - -
Viun8g00562 979 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 161 913 - -
Viun8g00562 979 SUPERFAMILY L domain-like 47 258 - -
Viun8g00562 979 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 722 923 - -
Viun8g00562 979 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515
Viun8g00562 979 Pfam Leucine rich repeat 427 486 IPR001611 GO:0005515
Viun8g00562 979 Pfam Leucine rich repeat 359 414 IPR001611 GO:0005515
Viun8g00562 979 ProSiteProfiles Protein kinase domain profile. 646 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00562 979 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 297 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00562 Viun-Chr8 4014925 4023054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00562 92 978 Receptor kinase-like Gene Family AT5G07180 65.692 0.0 1141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Viun8g00562 Pkinase 5.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00562 K20718 - gmx:100782307 1849.71