Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00561 ATGAATCTGCTCCCCGGCTCCAAGGTTTGGGTCGAGGACCGGGATGCTGCTTGGCTGCCAGCTGAAGTGCTCGATTCCGAAGGTAGCAATATTCTGCTACTAACTGATTCCGGCAAGAAGGTGTTTGCTTCCAAGGAGAAACTGTTCCCGAGGGATGCTGACGAAGAGGAGCATGGCGGATTCGAAGACATGACCCGGTTGGCGTACTTGAACGAGCCGGGAGTGTTGTTCAATCTTCGAAGAAGATACGCGCTCAATGATATCTATACATATACCGGGAGCATTTTAATAGCCGTTAATCCGTTCACAAAGCTTCCACATTTATATGATTCCCATATGATGGAGCAATATAAGGGAGCTCCATTGGGTGAGCTTAGCCCACATGTTTTTGCTGTCGCTGATGCATCATACAGAGCAATGATGAATGAAGGTAAAAGTCAATCTATCTTGGTTAGCGGCGAAAGTGGTGCTGGAAAAACTGAGACAACAAAATTGATCATGCAGTATCTTACCTTTGTTGGTGGACGTGCTGGTGGTGATGATAGAACAGTTGAACAACAAGTTCTTGAATCCAATCCACTTTTAGAGGCGTTTGGTAATGCAAGGACTGTTAGGAATGACAATTCAAGTCGTTTTGGGAAGTTTGTTGAAATTCAGTTTGATTCAAATGGTAGAATATCTGGTGCTGCAATTAGAACTTACTTACTGGAAAGGTCAAGAGTAGTGCAGATAACGGATCCAGAGAGAAATTATCACTGCTTTTATCAGTTGTGTTCATTTGAAAGGGATGCAGAGAAGTATAAGTTAGGACATCCGAGTCACTTCCACTATCTAAATCAAAGTAAAATCTATGAATTAGATGGTGTAAGCAACTCAGAAGAATACCTGAAGACAAGGAGGGCAATGGATATTGTTGGCATTAGTCACGAGGATCAGGAAGCCATATTTCGTGTCTTAGCAGCAATTTTACATTTGGGAAACGTCGAATTTTCACCTGGAAAAGAGCATGACTCATCGGCAGTAAAGAACGACAAATCAAGATTTCATATGCAGATGGCTGCTGATCTTTTCATGTGTGATGTAGACCTACTGCTGGCAACATTGTGTACTCGTTCAATACAAACTCGTGAAGGAAGTATTGTCAAGGCCCTTGATTGCAATGCGGCTGTTGCTGGGCGTGATGCTTTGGCGAAAACTGTTTATGCCCGTTTGTTTGATTGGCTTGTTGATAAGATCAATATGTCTGTTGGGCAAGACATCAATTCGAAGATACAAATTGGAGTTTTGGATATTTATGGTTTTGAGTGCTTTAAGGATAACAGTTTTGAGCAATTTTGCATTAATTTTGCAAATGAAAAGCTTCAGCAACATTTTAATGAGCATGTGTTCAAGATGGAACAGGAGGAGTATGGCAAAGAAGAAATTAACTGGAGTTACATTGAATTTGTAGATAACCAAGATGTTTTAGATTTAATTGAAAAGAAACCTATTGGTATCATTGCTCTGTTGGATGAAGCTTGTATGTTTCCAAAGTCGACTCATGAAACATTCTCAACCAAGTTGTTTCAGCATTTCCGATCTCACCCTAGGTTGGGAAAGGAAAAGTTTTCGCAAACAGATTTTACTATTTCTCATTATGCTGGAAAGGTCACGTATCATACAGACACCTTTTTAGACAAAAATCGTGATTATGTTGTAGTAGAACATTGCAATCTCTTATCTTCTTCAAAATGCCTTTTCGTTTCTGGTCTATTTCCTTTGCTATCTGAAGAATCTTCAAGATCATCATACAAGTTTTCTTCAGTAGCTGCTAGATTTAAGCAACAACTTCAAGCACTCATGGAGACCCTAAACTCAACAGAGCCTCACTACATACGATGTGTGAAACCAAATTCTTTGAATCGACCTCAACTATTTGAAAATGCAAGTGTCATACACCAGTTACGCTGTGGGGGTGTCCTTGAGGCTGTTCGGATAAGTCTGGCAGGTTATCCCACTCGAAGAACTTACTCAGAGTTTGTGGATCGTTTTGGGTTGATAGCCCCTGAATTTATGGATGGAAGTTATGATGATAAAGCTGCAACTGAAAAAATTTTGCAAAAGCTTAAGCTTGAGAATTTTCAGTTGGGTAGGACCAAAGTATTTCTCAGGGCTGGCCAAATAGGTATTTTAGACCAAAGACGTGCTGAAGTTTTAGACAATGCTGCAAAGTGTATCCAGCGCCGCATGAGGACATTTATTGCACATCAGGATTTTATATTTTTAAGATCTGCTGCGATTTCTCTTCAGGCATGCTGCAGGGGTCGCATTGCCAGAAAGATATATGCTGCTAAAAGGGAGACAGCAGCGGCTATCTCCATTCAGAAATATATTCGGATGTGGTTTACAAGGCATGCTCACCTAAAATTGTATTTTTCTGCTATTATCATTCAATCTCATGTTCGAGGTTTTGTGACTCGCCAAAGATTCTTACATGTAAAAGAACATAGAGCTGCTACTCTTGTTCAGGCCTATTGGAGGATGTCCAAGGTTAGGTCATCTTTCTTACGATATCAAACTTCAATTGTTGCAATACAATGCCTTTGGCGGTGCAGACAAGCAAAAAGAGAGTTGCGGAGACTTAAACAAGAGGCAAATGAAGCTGGTGCTCTTCGTTTAGCAAAGAATAAACTGGAGAAGCAAATGGAGGATCTCACATGGCGTTTGCATCTTGAAAAGAAAATAAGGGTTTCTAATGAAGAGGCTAAAAAAATAGAGATTTCCAAACTTCAAAAGATGTTAGAAGCTTTGAATCTTGAATTAGATGCTGCTAAATTGGCAAACATTAATGAGTGCAACAAGAATGCTGTTCTGCAAAATCAATTAGAATTGTCAGTAAAGGAAAAGTCTGCTTTGAAACGGGACCTAGTAGCAGTGGATGAATTGCGAAAGGAAAATGCTTTATTAAAGGTTTCATTGGATGCATTTGAAAGGAAGTACAGGACCTTAGAGCTTGAGCTTATGAATGCTCAGAAAGGCCGGGATGAAACCATGGAGAAACTGAGGGAGTTTGAACATAAGTGTTCTCAACTCGAGCAAAATGAAAAAAAGCTTGAGGAAAAGTTAAAGAGTTTAGAAAATGAAAATCATGTGCTTCGTCAGAAAGCCTTAAGTACCCCTCTTAAGAGTAACCGCCCAGGTTTTGCCAAGTCAGTGTCAGAAAAATACTCAAGTGCGATTACCTCTCGCACTGATCGAAAGACCATATTTGAGTCACCCACACCCACAAAACTTATTGCTCCTTTTACACTAGGCTTGTCAGACTCTCGTCGATCTAAGCTAACAGCAGAGAAACACCAGGATAACTATGAATTCCTCTCCAAGTGTATAAAAGAAAATTTGGGATTTAAAAATGGTAAACCTATTGCTGCTCGTATTATATATAAATGTCTGCTTCATTGGCATTCATTTGAAAATGAGCGCACAACCATTTTTGATTCAATCATCGAAGGCATAAATGAGATTCTAAAGGTTAGGGAGGATGACATTATCCTGCCATATTGGCTGTCCAATACCTCTGCGCTTCTATGCCTTTTACAGAGGAACTTACGGTCAAATGGTTTTTTAACTGCCACTGCTCAGCGTTATCCTGGATCATCTGGTTTAATCAGCCGGACTGGACATTGGATTAAAATTGTATAG 3681 0.4004 MNLLPGSKVWVEDRDAAWLPAEVLDSEGSNILLLTDSGKKVFASKEKLFPRDADEEEHGGFEDMTRLAYLNEPGVLFNLRRRYALNDIYTYTGSILIAVNPFTKLPHLYDSHMMEQYKGAPLGELSPHVFAVADASYRAMMNEGKSQSILVSGESGAGKTETTKLIMQYLTFVGGRAGGDDRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDSNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCSFERDAEKYKLGHPSHFHYLNQSKIYELDGVSNSEEYLKTRRAMDIVGISHEDQEAIFRVLAAILHLGNVEFSPGKEHDSSAVKNDKSRFHMQMAADLFMCDVDLLLATLCTRSIQTREGSIVKALDCNAAVAGRDALAKTVYARLFDWLVDKINMSVGQDINSKIQIGVLDIYGFECFKDNSFEQFCINFANEKLQQHFNEHVFKMEQEEYGKEEINWSYIEFVDNQDVLDLIEKKPIGIIALLDEACMFPKSTHETFSTKLFQHFRSHPRLGKEKFSQTDFTISHYAGKVTYHTDTFLDKNRDYVVVEHCNLLSSSKCLFVSGLFPLLSEESSRSSYKFSSVAARFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQLFENASVIHQLRCGGVLEAVRISLAGYPTRRTYSEFVDRFGLIAPEFMDGSYDDKAATEKILQKLKLENFQLGRTKVFLRAGQIGILDQRRAEVLDNAAKCIQRRMRTFIAHQDFIFLRSAAISLQACCRGRIARKIYAAKRETAAAISIQKYIRMWFTRHAHLKLYFSAIIIQSHVRGFVTRQRFLHVKEHRAATLVQAYWRMSKVRSSFLRYQTSIVAIQCLWRCRQAKRELRRLKQEANEAGALRLAKNKLEKQMEDLTWRLHLEKKIRVSNEEAKKIEISKLQKMLEALNLELDAAKLANINECNKNAVLQNQLELSVKEKSALKRDLVAVDELRKENALLKVSLDAFERKYRTLELELMNAQKGRDETMEKLREFEHKCSQLEQNEKKLEEKLKSLENENHVLRQKALSTPLKSNRPGFAKSVSEKYSSAITSRTDRKTIFESPTPTKLIAPFTLGLSDSRRSKLTAEKHQDNYEFLSKCIKENLGFKNGKPIAARIIYKCLLHWHSFENERTTIFDSIIEGINEILKVREDDIILPYWLSNTSALLCLLQRNLRSNGFLTATAQRYPGSSGLISRTGHWIKIV 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00561 1226 PRINTS Myosin heavy chain signature 193 220 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun8g00561 1226 PRINTS Myosin heavy chain signature 146 171 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun8g00561 1226 PRINTS Myosin heavy chain signature 89 108 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun8g00561 1226 PRINTS Myosin heavy chain signature 478 506 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun8g00561 1226 PRINTS Myosin heavy chain signature 425 453 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun8g00561 1226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 779 827 IPR027417 -
Viun8g00561 1226 FunFam Myosin heavy chain 249 303 - -
Viun8g00561 1226 Pfam IQ calmodulin-binding motif 781 799 IPR000048 GO:0005515
Viun8g00561 1226 Pfam IQ calmodulin-binding motif 756 775 IPR000048 GO:0005515
Viun8g00561 1226 Pfam IQ calmodulin-binding motif 829 848 IPR000048 GO:0005515
Viun8g00561 1226 Pfam IQ calmodulin-binding motif 806 823 IPR000048 GO:0005515
Viun8g00561 1226 Pfam Myosin head (motor domain) 62 717 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun8g00561 1226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 823 883 IPR027417 -
Viun8g00561 1226 PANTHER MYOSIN 805 1210 - -
Viun8g00561 1226 SMART iq_5 802 824 IPR000048 GO:0005515
Viun8g00561 1226 SMART iq_5 827 849 IPR000048 GO:0005515
Viun8g00561 1226 SMART iq_5 779 801 IPR000048 GO:0005515
Viun8g00561 1226 SMART iq_5 731 753 IPR000048 GO:0005515
Viun8g00561 1226 SMART iq_5 850 872 IPR000048 GO:0005515
Viun8g00561 1226 SMART iq_5 754 776 IPR000048 GO:0005515
Viun8g00561 1226 ProSiteProfiles Dilute domain profile. 1159 1226 IPR002710 -
Viun8g00561 1226 SMART MYSc_2a 53 730 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun8g00561 1226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 779 IPR027417 -
Viun8g00561 1226 Coils Coil 913 940 - -
Viun8g00561 1226 Gene3D - 249 306 - -
Viun8g00561 1226 ProSiteProfiles IQ motif profile. 806 832 IPR000048 GO:0005515
Viun8g00561 1226 ProSiteProfiles IQ motif profile. 755 784 IPR000048 GO:0005515
Viun8g00561 1226 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 4 53 IPR004009 GO:0003774|GO:0005524|GO:0016459
Viun8g00561 1226 Gene3D Kinesin motor domain 62 659 IPR036961 -
Viun8g00561 1226 Coils Coil 864 894 - -
Viun8g00561 1226 Gene3D - 664 730 - -
Viun8g00561 1226 ProSiteProfiles Myosin motor domain profile. 59 729 IPR001609 GO:0003774|GO:0005524|GO:0016459
Viun8g00561 1226 ProSiteProfiles IQ motif profile. 851 880 IPR000048 GO:0005515
Viun8g00561 1226 Gene3D - 435 620 - -
Viun8g00561 1226 Gene3D - 731 781 - -
Viun8g00561 1226 Gene3D - 782 829 - -
Viun8g00561 1226 Gene3D - 830 879 - -
Viun8g00561 1226 Gene3D Myosin VI head, motor domain, U50 subdomain 308 598 - -
Viun8g00561 1226 Coils Coil 972 1048 - -
Viun8g00561 1226 CDD MYSc_Myo11 73 717 IPR036018 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00561 Viun-Chr8 3987936 4007680 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00561 1 1208 Myosins gene family AT4G33200 71.689 0.0 1795
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00561 K10357 - gmx:100790815 2234.14