Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00546 ATGGTATTCCTTCAAGAATTGGTTCCAGAGTTCACTCCACTTGGTATTTCCAACATGGATTTCTGTTTGGCTATGAAGGAAATAGACTATCCTGCTCCGAGACTGGTTCCTAATCCCCAACGACCCTTGTCTTCTTCGAGGTTTTTCACTTGCTTTAAATCCGAACTATTGCTGCCTCAGACATGCATTAAGTTGGAATATGCCTTTGTTATTTTTTGGGCACATGAATTGGACTATGACAACATTCAACTAATTGATCCACGTCAGAAGAAACATGATGTTGGTATACACAAGTCGGTAAATGGAGACTTGATTCTACAGAAAGGGGTGTTAGAGATGGCTGAATATTTCAACGTCAAGGAAAACAAAATCATACATATGAGTTATGTTGACAGAAATACGTTTTTATTTAGGCTTTTTTCATCTGAGGGAATTGAAATTAATTATGCTCCTCAAGTGGTCAGCGTTAGTAACCATGATACACATCTCGGAGACTATGACCCTGCAGATTTTTACTACTCAATGGCCAAATGCTTATCTGAGAATGATACCAAATCATCATCACTGTACTTGGAATCCGAATTTGCAGCAAAAGCTCTTGTTAAGAAGAGGACACGATACATATTGGTCAATTCTGAAGGTGATTGTTGGCCTTGTACAATTCGAAGATCTGGAAGAACGAACAAAGAATGCTACTTAAGTTGTGGGTGGAAAGAATTCTGCAAGCAGAACAAATTAAAGGAAGGAACCATAATCAGACTTGGTGTAGATAAGGAACAATCGAATTTTATCTATGTAATGGAGATAAAAGTATAA 816 0.3775 MVFLQELVPEFTPLGISNMDFCLAMKEIDYPAPRLVPNPQRPLSSSRFFTCFKSELLLPQTCIKLEYAFVIFWAHELDYDNIQLIDPRQKKHDVGIHKSVNGDLILQKGVLEMAEYFNVKENKIIHMSYVDRNTFLFRLFSSEGIEINYAPQVVSVSNHDTHLGDYDPADFYYSMAKCLSENDTKSSSLYLESEFAAKALVKKRTRYILVNSEGDCWPCTIRRSGRTNKECYLSCGWKEFCKQNKLKEGTIIRLGVDKEQSNFIYVMEIKV 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00546 271 Gene3D - 172 269 IPR015300 -
Viun8g00546 271 CDD B3_DNA 177 264 IPR003340 GO:0003677
Viun8g00546 271 PANTHER B3 DOMAIN-CONTAINING 81 256 - -
Viun8g00546 271 SUPERFAMILY DNA-binding pseudobarrel domain 175 267 IPR015300 -
Viun8g00546 271 ProSiteProfiles B3 DNA-binding domain profile. 174 270 IPR003340 GO:0003677
Viun8g00546 271 Pfam B3 DNA binding domain 179 263 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00546 Viun-Chr8 3936598 3938012 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00546 179 260 REM Transcription Factor Family AT2G24700 26.829 1.51e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun8g00546 B3 1.6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00546 - - vun:114194236 559.296