Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00536 ATGGGTGCATCTGGAAAATGGGTGAAGGCCTTGATCGGAATCAACAGCAAGAACGAACTTGGAGGGAAGAAGAAGAAATGGAGGCTATGGAAGAGTTCTTCTGCAGGGGAGAACAGATCTCAAGAATTCGAGTATGGCAGTGTGGCTTCCGATTCTTTCACCGCCGCAGTGGCCACAGTTGTCAGAGCTCCACCAAAGGATTTCAAACTCCTCAAGCAAGAATGGGCTGCCACACGAATTCAAACTGCTTTTCGTGCCTTCTTGGCAAGAAGGGCATTGAGGGCGTTGAAGGGAGTGGTGAGGCTTCAAGCTCTTGTAAGGGGTAGACTTGTGAGGAAGCAGGCTGCAGTAACACTGAGGTGCATGCAGGCCTTGGTTCGTGTGCAGGCACGTGTGAGGGCGCGGCGCGTGCGAATGTCCATGGAGGGGCAAGCTGTGCAAAACATGCTCAATGAACGCCGCACCAAGGCTGAACTCAACAAGGAAGCTGAGGATGGTTGGTGTGATAGCAAAGGATCACTGGAAGATGTGAAGACAAAACTGCAAATGAGGCAAGAGGGAGCTTTCAAGAGGGAGAGAGCAATTGCATACTCTCTTGCCCAAAAGCAATGGAGATCAACCCCCATTTCAAATTCAAGAGCAAACAACACCTCTTTGAACAAGCAAGAGATAGACAAGGCTAACTGGGGATGGAGTTGGTTGGAACGTTGGATGGCAGCAAAGCCATGGGAGAGTAGATTGATGGAACAAACTCGTCATCATGCTGATGCCACAGAGAAAACTCCTCCTCCAAAGAAATGTGTGGACCTCATAAATTCAAAAAAAAATTCAGAACCATGCAATGTCAAAGTCAGAAAGAACAATGTCACCACAAGGATTTCAGCCAGACCTCCCCAAATTGGCCAAGCCACTCGTTCATCCTCAAGTCCTAGTTCTGAGTTTCACTATGATGAGAGCTCTAATTCATCTTCAATATGCACATCCATGACACCAATATCTGGGAGTGTTTCCTTGCCTTGTGAGAGGACAGAGGATAGTAGCAACAGTACTACTAGGCCTAGTTACATGAACCTGACCGAGTCAACCAAGGCAAAGCAGAAAACCAGCAGTCATCAATACAACAGATCTCAGAGGCAACAGTCCATGGATGAGTTTCAGTTTCTCAAAAGGACAGCGGTTTTCTCAAATGGAGATTCCAAAAGCATCGGTGCTTCTGACCCTTCAACCAACTTTTCTAGGCCACTTTACCTACCCACCTACATGGATAAGAAGCCACGGTGA 1281 0.4762 MGASGKWVKALIGINSKNELGGKKKKWRLWKSSSAGENRSQEFEYGSVASDSFTAAVATVVRAPPKDFKLLKQEWAATRIQTAFRAFLARRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSMEGQAVQNMLNERRTKAELNKEAEDGWCDSKGSLEDVKTKLQMRQEGAFKRERAIAYSLAQKQWRSTPISNSRANNTSLNKQEIDKANWGWSWLERWMAAKPWESRLMEQTRHHADATEKTPPPKKCVDLINSKKNSEPCNVKVRKNNVTTRISARPPQIGQATRSSSSPSSEFHYDESSNSSSICTSMTPISGSVSLPCERTEDSSNSTTRPSYMNLTESTKAKQKTSSHQYNRSQRQQSMDEFQFLKRTAVFSNGDSKSIGASDPSTNFSRPLYLPTYMDKKPR 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00536 426 Pfam IQ calmodulin-binding motif 97 114 IPR000048 GO:0005515
Viun8g00536 426 Pfam IQ calmodulin-binding motif 75 94 IPR000048 GO:0005515
Viun8g00536 426 MobiDBLite consensus disorder prediction 274 384 - -
Viun8g00536 426 MobiDBLite consensus disorder prediction 251 384 - -
Viun8g00536 426 ProSiteProfiles IQ motif profile. 97 124 IPR000048 GO:0005515
Viun8g00536 426 ProSiteProfiles IQ motif profile. 73 101 IPR000048 GO:0005515
Viun8g00536 426 MobiDBLite consensus disorder prediction 396 415 - -
Viun8g00536 426 SMART iq_5 95 116 IPR000048 GO:0005515
Viun8g00536 426 SMART iq_5 72 94 IPR000048 GO:0005515
Viun8g00536 426 MobiDBLite consensus disorder prediction 396 426 - -
Viun8g00536 426 PANTHER IQ-DOMAIN 5-RELATED 1 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00536 Viun-Chr8 3873909 3876495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00536 1 426 IQD Protein Family AT2G26180 58.730 3.73e-138 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00536 - - gmx:100787102 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00536 8 3873909 3876495 Viun9g03288 9 39719135 39721323 PCT