LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun8g00533	ATGGATGGAATTGTGGTGAAGGAGGAAGAAACAGTGACAGGTGGTGGTGGTGGTTCATCATCATCATCATCTTCGCCTTTGAGCTTTACTCCACAACCAATGGAAGGGTTGAACGAAGTGGGTACCCCACCATTTTTGACAAAGATCTATGACATGGTGGAAGATCATTCCACAGATTCTGTTGTTTCATGGAGCACTTCTTGCAATAGCTTTGTTGTCTGGGATTCTCACAACTTTTCTACTAACATTCTTCCTCGTTACTTCAAGCACAACAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATGGGTTTAGGAAAGTTGATCCTGACAGATGGGAGTTTGCAAATGAAGGATTTTTGGCAGGACAGAGACACTTACTGAAGGCTATAAAGAGAAGAAGAAGAGTGTCACAGAGCATGCAAGAAAGAGGAGTTGGAGGAGCATGTGTTGAAGTGGGAGAGTTTGGACCAGAAGGTGAGTTGGAGAGGTTGAAAAGAGATAGCAACATTCTGATGGCAGAAATTGTGAGGTTGAGGCACCAAGAGCGGAACTCAAGGGACCAATTGAGTGCCATGGAAACCAGATTGCAAGCCACAGAGAAGAAACAGCACAAGATGATGCTATTCCTTGCCAAAGCACTAAAAAATCCATCTTTCATGCAACAATTAGTCCACAAGACCCCCCAAATGTTGGATGCTGAAATCAATAGGAAAAGGAGACTAATTGCTGGCCAGAGTTTGGAGAATCTGCAACAAGATGATCCTGTAACATTGATGGACTATTCAAATCAACAAGATTTGGCAACTATGGAACCTGAGATGAACACTTTTTTCTCACCTGCTTTCGATAGTGAACTTGGTCATGAAATCAAAGAGTCTGCACTGGATTCTGATATAACAGCTGGTCAGAGTTATTTTGGTGACACAATATTAGAGGACTTGCTCATTGAAGACTTGGTTTCTGGGGATCCAAAGGATGAAGTTATCATTGGTGATTGTTCCCAGATTGGTGTTCCAATGGAGGATTTGGTAGCATACCCTGACGATTGGAATCATATGAACCATTCAGGATCAGAACCATAG	1086	0.4273	MDGIVVKEEETVTGGGGGSSSSSSSPLSFTPQPMEGLNEVGTPPFLTKIYDMVEDHSTDSVVSWSTSCNSFVVWDSHNFSTNILPRYFKHNNFSSFIRQLNTYGFRKVDPDRWEFANEGFLAGQRHLLKAIKRRRRVSQSMQERGVGGACVEVGEFGPEGELERLKRDSNILMAEIVRLRHQERNSRDQLSAMETRLQATEKKQHKMMLFLAKALKNPSFMQQLVHKTPQMLDAEINRKRRLIAGQSLENLQQDDPVTLMDYSNQQDLATMEPEMNTFFSPAFDSELGHEIKESALDSDITAGQSYFGDTILEDLLIEDLVSGDPKDEVIIGDCSQIGVPMEDLVAYPDDWNHMNHSGSEP	361

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun8g00533	361	Pfam	HSF-type DNA-binding	45	134	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun8g00533	361	Gene3D	-	38	135	IPR036388	-
	Viun8g00533	361	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	31	277	IPR027725	-
	Viun8g00533	361	Coils	Coil	162	203	-	-
	Viun8g00533	361	SMART	hsfneu3	41	134	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun8g00533	361	PRINTS	Heat shock factor (HSF) domain signature	45	68	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun8g00533	361	PRINTS	Heat shock factor (HSF) domain signature	83	95	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun8g00533	361	PRINTS	Heat shock factor (HSF) domain signature	96	108	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun8g00533	361	MobiDBLite	consensus disorder prediction	14	32	-	-
	Viun8g00533	361	FunFam	Heat shock transcription factor 1	38	135	-	-
	Viun8g00533	361	SUPERFAMILY	"Winged helix" DNA-binding domain	42	134	IPR036390	-
	Viun8g00533	361	MobiDBLite	consensus disorder prediction	1	34	-	-
	Viun8g00533	361	ProSitePatterns	HSF-type DNA-binding domain signature.	84	108	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun8g00533	Viun-Chr8	3846347	3848689	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun8g00533	31	361	HSF	AT2G26150	48.127	1.90e-106	314

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Viun8g00533		HSF_DNA-bind	5.8e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun8g00533	K09419		-	gmx:100778558	468.388