Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00522 ATGTCTAATTTGACTTCTGCATCGAGTGAAATAAGTGCTTCTTCAGGAATCAGAAATGACAATGGTTTTTTCCATGCTCACCAATACTCTTCCACTTCAATAAATCAAGAACCACAACCAAAAAAGAAGAGAAGTCTTCCAGGCCACCCAGACCCTGATGCAGAAGTGATAGCATTGACTCCAGAGACCCTATTGGCAACAAACAGGTTTGTGTGTGAGATATGTCAGAAAGGGTTTCAAAGGGATCAGAATCTGCAGCTTCACAGAAGAGGGCACAATCTGCCATGGAAGCTGAAGAAGAAGAACAGCAAAGAGGTGAGAAAGAAAGTGTATGTTTGTCCAGAGGCATCATGTGTTCACCATGACCCTTCAAGGGCCCTTGGGGACCTCACTGGAATCAAGAAGCACTTTTTCAGGAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAGTGTTCCAAACGCTATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAATCTGTGGCACCAGAGAATACAAGTGTGACTGTGGTACCCTTTTCTCTAGAAGGGACAGCTTTATCACTCACAGAGCCTTCTGTGATGCCTTAGCACAGGAAAGTGGAAGAGCAGTGAACCCTCACTCTCTATTATCATCTCAGTCCCAATTTCGAAGCCATGGCCTTCAACTCGAAGCACCACCATCATCATCATCACTGGTAATGAAAAGAGAACAAGATTTGAACCTATTAGGTCAAGAAATTCCTTCATGGTTATCTTCTCCAACAGTGTTGGAACAATCACTGAGAACCACCTTAGACTTCTCAACACCACACCACTCCTTGTTCCACCATGATCAAAACCCTAACCCTATTACTACTACTACTACTTCTTCTTCTTCTACAACAACACCCTCTTTTCTTCCTTCTTTCAGTTCCTTCCATTATTCCACGACTTCTCCTCACATGTCAGCCACTGCTTTGTTGCAAAAAGCCTCACAAATAGGCGTAACAGTGAGTGCAGCAGCAGCTTCACAAGCGATGATAGTGAGACCCCACTTGTTTCTGCAGCAGGTTCACGTGCCTCAATGTACAACAACAACAACTACTACTACTACTACAACAGGGTATAATAATATGGCTTCATCTTCACCCGTTTCTGGAATGCTCATGGCTATCCCTTCACGTGAACAAATAGGGACTCATGGCTTCGCATCTTGA 1200 0.4383 MSNLTSASSEISASSGIRNDNGFFHAHQYSSTSINQEPQPKKKRSLPGHPDPDAEVIALTPETLLATNRFVCEICQKGFQRDQNLQLHRRGHNLPWKLKKKNSKEVRKKVYVCPEASCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAQESGRAVNPHSLLSSQSQFRSHGLQLEAPPSSSSLVMKREQDLNLLGQEIPSWLSSPTVLEQSLRTTLDFSTPHHSLFHHDQNPNPITTTTTSSSSTTTPSFLPSFSSFHYSTTSPHMSATALLQKASQIGVTVSAAAASQAMIVRPHLFLQQVHVPQCTTTTTTTTTTTGYNNMASSSPVSGMLMAIPSREQIGTHGFAS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00522 399 MobiDBLite consensus disorder prediction 273 297 - -
Viun8g00522 399 Gene3D Classic Zinc Finger 51 120 - -
Viun8g00522 399 FunFam protein indeterminate-domain 12-like 49 117 - -
Viun8g00522 399 Pfam Zinc finger, C2H2 type 70 92 IPR013087 -
Viun8g00522 399 Gene3D Classic Zinc Finger 124 202 - -
Viun8g00522 399 SMART c2h2final6 111 141 IPR013087 -
Viun8g00522 399 SMART c2h2final6 70 92 IPR013087 -
Viun8g00522 399 SMART c2h2final6 146 166 IPR013087 -
Viun8g00522 399 MobiDBLite consensus disorder prediction 31 54 - -
Viun8g00522 399 FunFam protein indeterminate-domain 5, chloroplastic-like 124 203 - -
Viun8g00522 399 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Viun8g00522 399 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 356 IPR031140 -
Viun8g00522 399 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Viun8g00522 399 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00522 Viun-Chr8 3767383 3771885 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00522 31 336 IDZ Gene Family AT3G50700 55.621 6.97e-116 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun8g00522 zf-C2H2 0.0092 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00522 K25870 - gmx:100807813 540.421